YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347745, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347745, gi|....

Description	E-value	Query Range	Subject Range
gi\|83654950, gi\|... - gi\|83721125\|ref\|YP_443123.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia thail...	295.0	[0..4]	[232..69]
gi\|115422238, gi... - gi\|187477652\|ref\|YP_785676.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A [Bordetella a...	292.0	[0..4]	[231..1]
gi\|17428586 - gi\|17428586\|emb\|CAD15272.1\| probable fesuccinyl-coa:3-ketoacid-coenzyme a transferase subunit a prot... gi\|17546289 - gi\|17546289\|ref\|NP_519691.1\| fesuccinyl-CoA:3-ketoacid-coenzyme A transferase subunit A protein [Ral...	291.0	[0..4]	[232..1]
gi\|108467967, gi... - gi\|108764087\|ref\|YP_631972.1\| 3-oxoacid CoA-transferase subunit A [Myxococcus xanthus DK 1622], gi\|1...	291.0	[0..4]	[233..1]
gi\|46132286, gi\|... - gi\|73540964\|ref\|YP_295484.1\| coenzyme A transferase [Ralstonia eutropha JMP134], gi\|72118377\|gb\|AAZ6...	290.0	[0..4]	[234..1]
gi\|76811222, gi\|... - gi\|76811222\|ref\|YP_333278.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia pseud... gi\|67682138, gi\|... - gi\|90291437\|ref\|ZP_01211064.1\| hypothetical protein Bpse17_02003925 [Burkholderia pseudomallei 1710a...	290.0	[0..4]	[232..1]
gi\|126194742, gi... - gi\|84326700\|ref\|ZP_00974725.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [...	290.0	[0..4]	[231..1]
gi\|147749341, gi... - gi\|83619161\|ref\|ZP_00929602.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|254206069, gi... - gi\|83623182\|ref\|ZP_00933461.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|126225973, gi... - gi\|82531234\|ref\|ZP_00890455.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|242314252, gi... - gi\|82535153\|ref\|ZP_00894174.1\| hypothetical protein Bpse110_02003524 [Burkholderia pseudomallei 1106... gi\|238522300, gi... - gi\|67641377\|ref\|ZP_00440157.1\| 3-oxoacid CoA-transferase, A subunit family [Burkholderia mallei GB8 ... gi\|67647601, gi\|... - gi\|67647601\|ref\|ZP_00445841.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|53719567, gi\|... - gi\|53719567\|ref\|YP_108553.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A [Burkholderia ... gi\|83678964, gi\|... - gi\|83678964\|ref\|ZP_00940683.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|53725273, gi\|... - gi\|53725273\|ref\|YP_102798.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia malle... gi\|100918316, gi... - gi\|67638700\|ref\|ZP_00437635.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|217393484, gi... - gi\|217423626\|ref\|ZP_03455127.1\| 3-oxoacid CoA-transferase, A subunit family [Burkholderia pseudomall... gi\|237504020, gi... - gi\|237812006\|ref\|YP_002896457.1\| 3-oxoacid CoA-transferase, A subunit family [Burkholderia pseudomal... gi\|226199692, gi... - gi\|226199692\|ref\|ZP_03795245.1\| 3-oxoacid CoA-transferase, A subunit family [Burkholderia pseudomall... gi\|124293496, gi... - gi\|124385476\|ref\|YP_001026215.1\| 3-oxoacid CoA-transferase subunit A [Burkholderia mallei NCTC 10229... gi\|134282326, gi... - gi\|134282326\|ref\|ZP_01769031.1\| 3-oxoacid CoA-transferase, A subunit family [Burkholderia pseudomall... gi\|167824459 - gi\|167824459\|ref\|ZP_02455930.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia ps... gi\|167845991 - gi\|167845991\|ref\|ZP_02471499.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia ps... gi\|167738864 - gi\|167738864\|ref\|ZP_02411638.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia ps... gi\|167816085 - gi\|167816085\|ref\|ZP_02447765.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia ps... gi\|167919233 - gi\|167919233\|ref\|ZP_02506324.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia ps... gi\|194313492, gi... - gi\|254177829\|ref\|ZP_04884484.1\| 3-oxoacid CoA-transferase, A subunit family [Burkholderia mallei ATC... gi\|167894570 - gi\|167894570\|ref\|ZP_02481972.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia ps... gi\|167911210 - gi\|167911210\|ref\|ZP_02498301.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia ps... gi\|67752336, gi\|... - gi\|67752336\|ref\|ZP_00491327.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|84522838, gi\|... - gi\|84522838\|ref\|ZP_01009974.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|184210553, gi... - gi\|99910064\|ref\|ZP_01317127.1\| hypothetical protein Bpse1_03003444 [Burkholderia pseudomallei 1655],... gi\|126219936, gi... - gi\|67737821\|ref\|ZP_00488553.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|87314075, gi\|... - gi\|87314075\|ref\|ZP_01095132.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|243061250, gi... - gi\|243061250\|gb\|EES43436.1\| 3-oxoacid CoA-transferase, A subunit family [Burkholderia mallei PRL-20]... gi\|167719861 - gi\|167719861\|ref\|ZP_02403097.1\| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia ps... gi\|100122376, gi... - gi\|67759895\|ref\|ZP_00498624.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [... gi\|85064744 - gi\|85064744\|ref\|ZP_01025597.1\| COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [...	290.0	[0..4]	[232..1]
gi\|84716479, gi\|... - gi\|84716479\|ref\|ZP_01023079.1\| Coenzyme A transferase binding site [Polaromonas naphthalenivorans C...	289.0	[0..4]	[233..1]
gi\|94555196, gi\|... - gi\|94984915\|ref\|YP_604279.1\| 3-oxoacid CoA-transferase, subunit A [Deinococcus geothermalis DSM 1130...	288.0	[0..4]	[232..1]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLNKVVSS YEEALTGLSD DMTIMVGGFG LCGIPEGLIN QMVKMGVKGL TAISNNAGVD  60
   61 DFGLGLLLKH RQISTMIASY VGENATFEQQ MLSGELNVIL TPQGTLAEKI RAGGAGIPAF 120
  121 FTATGYGTPV AEGKETREIK GRHYVLEESL TADFALVRAW KADTMGNLVF RKTAANFNPM 180
  181 MATAGKITVV EAEFIVEPGE LDPDHIHTPG IYVDRVIQGK FEKRIEQRTV KAAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1m3eA
Description:	Succinate:CoA transferase, N-terminal domain; Succinate:CoA transferase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-oxoacid CoA-transferase activity	2.22792536321983	bayes_pls_golite062009
catalytic activity	1.68776709414398	bayes_pls_golite062009
CoA-transferase activity	0.50782945985068	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.18413827683017	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: