YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPA_SHEON.

Description	E-value	Query Range	Subject Range
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	367.0	[0..1]	[291..1]
DAPA_GEOUR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1	363.0	[0..1]	[291..1]
DAPA_GEOMG - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	360.0	[0..1]	[291..1]
gi\|83647587, gi\|... - gi\|83647587\|ref\|YP_436022.1\| dihydrodipicolinate synthase [Hahella chejuensis KCTC 2396], gi\|8363563...	360.0	[0..1]	[294..1]
gi\|241906440, gi... - gi\|241906440\|ref\|ZP_04791022.1\| dihydrodipicolinate synthase [Desulfovibrio vulgaris RCH1], gi\|24188... DAPA_DESVV - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=... DAPA_DESVH - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 295...	360.0	[0..2]	[292..3]
DAPA_SYNFM - 4-hydroxy-tetrahydrodipicolinate synthase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) ...	359.0	[0..1]	[291..1]
DAPA_GEOSL - Dihydrodipicolinate synthase OS=Geobacter sulfurreducens GN=dapA PE=3 SV=1 DAPA_GEOSL - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	358.0	[0..1]	[291..1]
gi\|91202476 - gi\|91202476\|emb\|CAJ72115.1\| strongly similar to dihydropicolinate synthase (DHDPS) [Candidatus Kuene...	357.0	[0..1]	[292..1]
DAPA_AQUAE - Dihydrodipicolinate synthase OS=Aquifex aeolicus GN=dapA PE=1 SV=1 DAPA_AQUAE - 4-hydroxy-tetrahydrodipicolinate synthase OS=Aquifex aeolicus (strain VF5) GN=dapA PE=1 SV=1	357.0	[0..1]	[294..1]
gi\|91784216, gi\|... - gi\|91784216\|ref\|YP_559422.1\| dihydrodipicolinate synthase [Burkholderia xenovorans LB400], gi\|916881...	356.0	[0..2]	[292..30]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINGSIVALI TPMNSDGSVD FASLERLVEF HIDQGTDAIV AVGTTGESAT LPMNEHVTVV  60
   61 AQTVKFAAGR IPVIGGNGAN ATAEAIELTK SLSKVGVAAM LGVTPYYNKP TPKGLVAHYK 120
  121 AVAASTDIPQ ILYNVPGRTA VDMKPETVAE LVSVSNIIGV KEATGDVSRV KRLRELCGND 180
  181 FMLYSGDDAT ASEFLLLGGN GVISVANNIV PKAFKAMCDA ALAGNAELAA SIDEPLRGLY 240
  241 STLFCEANPI PVKWAAHRMG LIECGHIRLP LTELSEQCHG LLLEAMTRAQ IEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.39794
Match:	1dhpA
Description:	Dihydrodipicolinate synthase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits