YRC Public Data Repository - Protein Structure Prediction

Protein:	SPEA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	637 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPEA_SHEON.

Description	E-value	Query Range	Subject Range
SPEA_THEEB - Biosynthetic arginine decarboxylase OS=Thermosynechococcus elongatus (strain BP-1) GN=speA PE=3 SV=1 SPEA_SYNEL - Biosynthetic arginine decarboxylase OS=Synechococcus elongatus GN=speA PE=3 SV=1	659.0	[0..2]	[635..9]
gi\|186686305, gi... - gi\|23130064\|ref\|ZP_00111883.1\| COG1166: Arginine decarboxylase (spermidine biosynthesis) [Nostoc pun...	655.0	[0..2]	[635..44]
gi\|46135463, gi\|... - gi\|75909629\|ref\|YP_323925.1\| arginine decarboxylase [Anabaena variabilis ATCC 29413], gi\|75703354\|gb...	651.0	[0..4]	[635..45]
SPEA_NOSS1 - Biosynthetic arginine decarboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=speA PE=3 SV=1 gi\|25290912 - pir\|\|AB2231 arginine decarboxylase [imported] - Nostoc sp. (strain PCC 7120)	651.0	[0..4]	[635..53]
SPEA_SHESA - Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain ANA-3) GN=speA PE=3 SV=1	636.0	[0..1]	[637..1]
SPEA_SHESR - Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain MR-7) GN=speA PE=3 SV=1 SPEA_SHESM - Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain MR-4) GN=speA PE=3 SV=1	635.0	[0..1]	[637..1]
gi\|81168727, gi\|... - gi\|81299846\|ref\|YP_400054.1\| arginine decarboxylase [Synechococcus elongatus PCC 7942], gi\|81168727\|...	633.0	[0..2]	[634..18]
SPEA_SHESW - Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain W3-18-1) GN=speA PE=3 SV=1 gi\|124547165, gi... - gi\|124547165\|ref\|ZP_01706118.1\| arginine decarboxylase [Shewanella putrefaciens 200], gi\|124509465\|g... SPEA_SHEPC - Biosynthetic arginine decarboxylase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=speA...	633.0	[0..1]	[637..1]
gi\|71734047, gi\|... - gi\|71734047\|ref\|YP_276540.1\| arginine decarboxylase [Pseudomonas syringae pv. phaseolicola 1448A], g...	631.0	[0..2]	[635..12]
SPEA_PSESM - Biosynthetic arginine decarboxylase OS=Pseudomonas syringae pv. tomato GN=speA PE=3 SV=1 SPEA_PSESM - Biosynthetic arginine decarboxylase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=speA PE=3 ... gi\|213968024, gi... - gi\|213968024\|ref\|ZP_03396170.1\| biosynthetic arginine decarboxylase [Pseudomonas syringae pv. tomato...	631.0	[0..2]	[635..12]

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Predicted Domain #1

Region A:
Residues: [1-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDWSIEAAR AGYNVTHWSQ GFYGISDEGE VTVSPDPKNP DHKIGLNELA KDMVKAGVAL  60
   61 PVLVRFPQIL HHRVNSLCQA FDQAIQKYEY QADYLLVYPI KVNQQKTVVE EILASQASKE 120
  121 VPQLGLEAGS KPELMAVLAM AQKASSVIVC NGYKDNEYIR LALIGEKLGH KVYIVLEKLS 180
  181 ELKMVLAESK RLGVKPRLGL RARLAFQGKG KWQASGGEKS KFGLSAAQIL TVVDQLKQSD 240
  241 MLDSLQLLHF HLGSQIANIR DIRQGVSEAA RFYCELRELG ASINCFDVGG GLAVDYDGTR 300
  301 SQSNNSMNYG LSEYANNIVN VLTDICNEYE QPMPRIISES GRHLTAHHAV LITDVIGTEA 360
  361 YQVEDIQPPE EESPQLLHNM WQSWTELSGR ADQRALIEIY HDSQSDLQEA QSLFALGQLS 420
  421 LAERAWAEQA NLRVCHEVQG LLSTKNRYHR PIIDELNEKL ADKFFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.69897
Match:	2p3eA
Description:	No description for 2p3eA was found.

Predicted Domain #2

Region A:
Residues: [467-637]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFSLFQSLPD AWGIDQVFPV LPLSGLDKAP ERRAVMLDIT CDSDGIVDQY VDGQGIETTL  60
   61 PVPAWSAESP YLIGFFMVGA YQEILGDMHN LFGDTNSAVV SIEENGMTNI ESVLAGDTVA 120
  121 DVLRYVNLDA VDFMRTYEEL VNQHIAEDER AQILEELQVG LKGYTYLEDF S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.24
Match:	1knwA
Description:	Crystal structure of diaminopimelate decarboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.10300837435158	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: