YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347705, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347705, gi|....

Description	E-value	Query Range	Subject Range
gi\|66768322, gi\|... - gi\|66768322\|ref\|YP_243084.1\| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Xant...	149.0	[0..1]	[182..1]
gi\|21113243, gi\|... - gi\|21231558\|ref\|NP_637475.1\| CDP-diacylglycerol-glycerol-3- phosphate 3-phosphatidyltransferase [Xan... gi\|188991461, gi... - gi\|188991461\|ref\|YP_001903471.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase ...	137.0	[0..1]	[182..1]
gi\|77383290, gi\|... - gi\|77459287\|ref\|YP_348794.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Pse...	136.0	[0..3]	[182..1]
gi\|68345221, gi\|... - gi\|70730922\|ref\|YP_260663.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Pse...	136.0	[0..1]	[182..1]
gi\|90439755, gi\|... - gi\|90578922\|ref\|ZP_01234732.1\| putative CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransf...	134.0	[0..1]	[179..1]
gi\|89051261, gi\|... - gi\|89073043\|ref\|ZP_01159590.1\| putative phosphatidylglycerophosphate synthase [Photobacterium sp. SK...	134.0	[0..1]	[179..1]
gi\|21108319, gi\|... - gi\|21242832\|ref\|NP_642414.1\| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Xant... gi\|78047816, gi\|... - gi\|78047816\|ref\|YP_363991.1\| CDP-diacylglycerol-glycerol-3-phosphate3- phosphatidyltransferase [Xant...	134.0	[0..1]	[182..1]
gi\|90325331, gi\|... - gi\|90413710\|ref\|ZP_01221699.1\| putative phosphatidylglycerophosphate synthase [Photobacterium profun...	133.0	[0..1]	[179..1]
gi\|37679419, gi\|... - gi\|37679419\|ref\|NP_934028.1\| phosphatidylglycerophosphate synthase [Vibrio vulnificus YJ016], gi\|371...	133.0	[0..1]	[182..1]
gi\|28806935, gi\|... - gi\|28898717\|ref\|NP_798322.1\| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Vibr... gi\|28806935 - gi\|28806935\|dbj\|BAC60206.1\| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Vibri...	133.0	[0..1]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFNLPIALT LFRLFLLPIF VVLFYLPYSW TPFVAAFVFW LAALTDALDG YAARKLKQLT  60
   61 RFGAFLDPVA DKLMVITALV LLVDQYADIW LTLPALFMIG REIVISALRE WMAELGKRGT 120
  121 VAVSWIGKYK TAAQMVAIIG LIWQYNPLMI QAAFVLLYIA AVLTFWSKMS YILAAWKDLT 180
  181 AE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.161151
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits