YRC Public Data Repository - Protein Structure Prediction

Protein:	FABA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|88859243, gi\|... - gi\|88859243\|ref\|ZP_01133883.1\| beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isomer...	224.0	[0..1]	[171..1]
FABA_PSEF5 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC ...	224.0	[0..1]	[171..1]
FABA_PSEU2 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. syringae (strain B7... tr\|F3G8R0\|F3G8R0... - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. pisi str. 1704B GN=...	223.0	[0..1]	[171..1]
FABA_PSEAE - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain ATCC 15692 / ... FABA_PSEA8 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain LESB58) GN=fa... gi\|126166641, gi... - gi\|84321574\|ref\|ZP_00969929.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_PSEAB - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) G... gi\|126193335, gi... - gi\|84328129\|ref\|ZP_00976139.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_PSEAE - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa GN=fabA PE=3 SV=1 FABA_PSEA7 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain PA7) GN=fabA ... gi\|107101042 - gi\|107101042\|ref\|ZP_01364960.1\| hypothetical protein PaerPA_01002072 [Pseudomonas aeruginosa PACS2]	223.0	[0..1]	[171..1]
gi\|95111632 - gi\|95111632\|emb\|CAK16353.1\| beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isomerase... FABA_PSEE4 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas entomophila (strain L48) GN=fabA...	222.0	[0..1]	[171..1]
FABA_PSEPF - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fa...	222.0	[0..1]	[171..1]
FABA_PSE14 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas savastanoi pv. phaseolicola (str...	222.0	[0..1]	[171..1]
FABA_PASMU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pasteurella multocida GN=fabA PE=3 SV=1 FABA_PASMU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pasteurella multocida (strain Pm70) GN=fabA ...	222.0	[0..2]	[171..8]
FABA_PSEP1 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain F1 / ATCC 700007)... tr\|E4RE81\|E4RE81... - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain BIRD-1) GN=fabA P... tr\|I7AZR4\|I7AZR4... - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain DOT-T1E) GN=fabA ... FABA_PSEPK - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain KT2440) GN=fabA P...	221.0	[0..1]	[171..1]
FABA_AZOVD - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Azotobacter vinelandii (strain DJ / ATCC BAA... gi\|67155915, gi\|... - gi\|67155915\|ref\|ZP_00417542.1\| Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA [Azotobacter...	221.0	[0..1]	[171..1]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKANSFNKE ELIACGHGKL FGPNSPRLPV DNMLMIDRII TINDNGGEFG KGEIVAELDI  60
   61 KPELWFFDCH FITDPVMPGC LGLDAMWQLV GFYLGWEGAE GKGRALGVGE VKFTGQVLPG 120
  121 AKKVTYKLNI KRTIHRKLVM GIADAILEVD GRQIYSATDL KVGVFSDTST F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	2cf2C
Description:	No description for 2cf2C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits