YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347659, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	451 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347659, gi|....

Description	E-value	Query Range	Subject Range
gi\|146292618, gi... - gi\|77816564\|ref\|ZP_00815742.1\| MotA/TolQ/ExbB proton channel [Shewanella putrefaciens CN-32], gi\|778...	235.0	[0..1]	[451..1]
gi\|82743530, gi\|... - gi\|82743530\|ref\|ZP_00906171.1\| MotA/TolQ/ExbB proton channel family protein [Shewanella sp. W3-18-1]...	235.0	[0..1]	[451..1]
gi\|33285441 - gi\|33285441\|emb\|CAD68978.1\| ExbB-related protein [Photobacterium damselae subsp. piscicida]	230.0	[0..1]	[449..1]
gi\|27360410, gi\|... - gi\|27364292\|ref\|NP_759820.1\| hypothetical protein VV1_0844 [Vibrio vulnificus CMCP6], gi\|27360410\|gb...	229.0	[0..1]	[448..1]
gi\|114048025, gi... - gi\|114048025\|ref\|YP_738575.1\| MotA/TolQ/ExbB proton channel [Shewanella sp. MR-7], gi\|113889467\|gb\|A...	229.0	[0..1]	[451..1]
gi\|37678432, gi\|... - gi\|37678432\|ref\|NP_933041.1\| putative TolR protein [Vibrio vulnificus YJ016], gi\|37197172\|dbj\|BAC930...	228.0	[0..1]	[448..1]
gi\|113970798, gi... - gi\|82498607\|ref\|ZP_00884089.1\| MotA/TolQ/ExbB proton channel family protein [Shewanella sp. MR-4], g...	226.0	[0..1]	[451..1]
gi\|113951231, gi... - gi\|160874780\|ref\|YP_001554096.1\| MotA/TolQ/ExbB proton channel [Shewanella baltica OS195], gi\|160860...	225.0	[0..1]	[451..1]
gi\|91190248, gi\|... - gi\|91225002\|ref\|ZP_01260261.1\| putative TolR [Vibrio alginolyticus 12G01], gi\|91190248\|gb\|EAS76518.1...	225.0	[0..8]	[448..5]
gi\|68518199, gi\|... - gi\|68544106\|ref\|ZP_00583779.1\| MotA/TolQ/ExbB proton channel [Shewanella baltica OS155], gi\|68518199...	224.0	[0..1]	[451..1]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLITTAVL AASFSLTAGM VSAADAPKTI DQLLQQVKVD RAAEGKVNSK REQEFQAERG  60
   61 DKAALLKREK DALAAEKQRG KDLNQAFLDN ERKIAQLEED LKTAQGDLGE MFGVVKGEAG 120
  121 DFAGKLASSN VSAQYPNRDK FIADLGARKQ LPKIEELEKF WQEQLFEMAE SGKVVKFQGS 180
  181 VTAIDGSVKT TTIHRVGAYN LTAEGKYVVF NPELNLVQEL S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [222-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQPEGYQVSS VKKWEQITSG TAPFYIDPAR GVLLNIYTNK ASFEDRLESG GTIGYIILVL  60
   61 LALGLLIAAE RFIVLAVIGA KVKNQAKNVD KPGNNALGRI LKVYHENKDV DVETLELKLD 120
  121 EAILKETPAL EARIPILKVI AAIGPMLGLL GTVTGMIATF QSIQLFGTGD PKLMAGGISM 180
  181 ALVTTVQGLV AALPLMLLHA MLVARSKSIT QILEEQSAGI IAAHAEKRAD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.958607
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits