YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373386, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373386, gi|....

Description	E-value	Query Range	Subject Range
gi\|25989456 - gi\|25989456\|gb\|AAL82724.1\| outer membrane protein [Edwardsiella tarda]	223.0	[0..2]	[396..42]
gi\|13384121 - gi\|13384121\|gb\|AAK21276.1\|AF336097_1 Omp36 porin [Enterobacter aerogenes]	209.0	[0..1]	[396..1]
gi\|83716254, gi\|... - gi\|83716254\|ref\|YP_438901.1\| outer membrane porin OpcP [Burkholderia thailandensis E264], gi\|8365007...	209.0	[0..32]	[396..162]
gi\|30063654, gi\|... - gi\|30063654\|ref\|NP_837825.1\| outer membrane porin protein C [Shigella flexneri 2a str. 2457T], gi\|30... gi\|110806189, gi... - gi\|110806189\|ref\|YP_689709.1\| outer membrane porin protein C [Shigella flexneri 5 str. 8401], gi\|110... gi\|24113600, gi\|... - gi\|24113600\|ref\|NP_708110.1\| outer membrane porin protein C [Shigella flexneri 2a str. 301], gi\|2405... gi\|81245962, gi\|... - gi\|82544551\|ref\|YP_408498.1\| outer membrane porin protein C [Shigella boydii Sb227], gi\|81245962\|gb\|...	205.0	[0..1]	[396..1]
gi\|82776181, gi\|... - gi\|82776181\|ref\|YP_402530.1\| outer membrane porin protein C [Shigella dysenteriae Sd197], gi\|8124032...	205.0	[0..1]	[396..1]

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Predicted Domain #1

Region A:
Residues: [1-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTIVATAL AALFLAPTVS AIEIYKDDKN AVEIGGFIDA RVINTQGETE VVNGASRINF  60
   61 GFSRELSDGW NAFAKLEWGV NPVGNSDIVY SNRFESVQDE FFYNRLGYAG LSHDKYGTLT 120
  121 IGKQWGAWYD VVYGTNYGFV WDGNTAGVYT FNKDDGAVNG VGRGDKTVQY RNTFGDVSIA 180
  181 AQVQLKNSSF YTCDSVPDQD DCKKLWETGD RSAQQVDYDE TYGFAVTYKA TDKLTLTAGV 240
  241 NRGEFDVSFG NGESTTAVDL IYGAGIMWGG FDANGWYAAA NINKQENHDT DNLGRLIKEA 300
  301 VGAETLLSYK FDNGLRYFVS YNILDAGKDY VIQPNLPIYA NDVFKRQFVV AGVHYLMDAN 360
  361 TVIYLEGRKD FSDFTGVDEA AMALSEDDGI AIGIRYTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	2ixxA
Description:	No description for 2ixxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits