YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373374, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373374, gi|....

Description	E-value	Query Range	Subject Range
gi\|90413057, gi\|... - gi\|90413057\|ref\|ZP_01221054.1\| hypothetical phage shock protein C [Photobacterium profundum 3TCK], g...	162.0	[0..5]	[128..1]
gi\|54309602, gi\|... - gi\|54309602\|ref\|YP_130622.1\| phage shock protein C [Photobacterium profundum SS9], gi\|46914040\|emb\|C...	162.0	[0..5]	[128..1]
gi\|114048040, gi... - gi\|78691402\|ref\|ZP_00856020.1\| phage shock protein C [Shewanella sp. MR-7], gi\|78509195\|gb\|EAP22599.... gi\|82403902, gi\|... - gi\|82498101\|ref\|ZP_00883616.1\| phage shock protein C [Shewanella sp. MR-4], gi\|82403902\|gb\|EAP44608....	160.0	[0..1]	[128..1]
gi\|151364755, gi... - gi\|153000137\|ref\|YP_001365818.1\| phage shock protein C, PspC [Shewanella baltica OS185], gi\|15136475... gi\|120599400, gi... - gi\|82743723\|ref\|ZP_00906352.1\| phage shock protein C [Shewanella sp. W3-18-1], gi\|82718931\|gb\|EAP538... gi\|124549306, gi... - gi\|124549306\|ref\|ZP_01707606.1\| phage shock protein C, PspC [Shewanella putrefaciens 200], gi\|124507... gi\|217499030, gi... - gi\|217973895\|ref\|YP_002358646.1\| phage shock protein C, PspC [Shewanella baltica OS223], gi\|21749903... gi\|68543697, gi\|... - gi\|68543697\|ref\|ZP_00583392.1\| PspC [Shewanella baltica OS155], gi\|68518606\|gb\|EAN42172.1\| PspC [She... gi\|77816210, gi\|... - gi\|77816210\|ref\|ZP_00815412.1\| PspC [Shewanella putrefaciens CN-32], gi\|77808831\|gb\|EAO93249.1\| PspC... gi\|113950326, gi... - gi\|160874759\|ref\|YP_001554075.1\| phage shock protein C, PspC [Shewanella baltica OS195], gi\|16086028...	159.0	[0..1]	[128..1]
gi\|90439029, gi\|... - gi\|90579455\|ref\|ZP_01235264.1\| hypothetical phage shock protein C [Vibrio angustum S14], gi\|90439029...	158.0	[0..5]	[128..1]
gi\|117613419, gi... - gi\|78687947\|ref\|ZP_00852678.1\| phage shock protein C [Shewanella sp. ANA-3], gi\|78504320\|gb\|EAP17882...	158.0	[0..1]	[128..1]
gi\|28806163 - gi\|28806163\|dbj\|BAC59438.1\| phage shock protein C [Vibrio parahaemolyticus RIMD 2210633] gi\|28897949, gi\|... - gi\|28897949\|ref\|NP_797554.1\| phage shock protein C [Vibrio parahaemolyticus RIMD 2210633], gi\|288061...	156.0	[0..5]	[128..12]
gi\|89076403, gi\|... - gi\|89076403\|ref\|ZP_01162732.1\| hypothetical phage shock protein C [Photobacterium sp. SKA34], gi\|890...	155.0	[0..5]	[128..1]
gi\|91225994, gi\|... - gi\|91225994\|ref\|ZP_01260921.1\| phage shock protein C [Vibrio alginolyticus 12G01], gi\|91189435\|gb\|EA...	154.0	[0..5]	[128..2]
gi\|75855694, gi\|... - gi\|75855694\|ref\|ZP_00763338.1\| COG1983: Putative stress-responsive transcriptional regulator [Vibrio...	154.0	[0..5]	[128..2]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGTSGRTLY RIPQSGKIAG VCAGIAEYFA IETWLVRVLA VSIFLLGGSG VVFIIYVALW  60
   61 VILDIK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.468521
Match:	PF04024.3
Description:	No description for PF04024.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQNSSVRDDI EVKKKPWQSG EPAKQALSDV NRQFRSLEVR LQNLERHVTS DNFDLKRQIN  60
   61 SL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits