YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373373, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373373, gi|....

Description	E-value	Query Range	Subject Range
gi\|254848797, gi... - gi\|75831014\|ref\|ZP_00760282.1\| hypothetical protein VchoM_01000959 [Vibrio cholerae MO10], gi\|254848... gi\|227013583, gi... - gi\|75827031\|ref\|ZP_00756466.1\| hypothetical protein VchoO_01001191 [Vibrio cholerae O395], gi\|227118... gi\|75820118, gi\|... - gi\|75820118\|ref\|ZP_00750173.1\| hypothetical protein VchoV5_01000952 [Vibrio cholerae V51], gi\|116221... gi\|148875637, gi... - gi\|153828841\|ref\|ZP_01981508.1\| phage shock protein B [Vibrio cholerae 623-39], gi\|148875637\|gb\|EDL7... gi\|254285380, gi... - gi\|254285380\|ref\|ZP_04960345.1\| phage shock protein B [Vibrio cholerae AM-19226], gi\|197753227\|ref\|Y... gi\|229607786, gi... - gi\|229607786\|ref\|YP_002878434.1\| phage shock protein B [Vibrio cholerae MJ-1236], gi\|229370441\|gb\|AC... gi\|229529293, gi... - gi\|229529293\|ref\|ZP_04418683.1\| phage shock protein B [Vibrio cholerae 12129(1)], gi\|229333067\|gb\|EE... gi\|229337349, gi... - gi\|229523768\|ref\|ZP_04413173.1\| phage shock protein B [Vibrio cholerae bv. albensis VL426], gi\|22933... gi\|229520719, gi... - gi\|229520719\|ref\|ZP_04410142.1\| phage shock protein B [Vibrio cholerae TM 11079-80], gi\|229342274\|gb... gi\|229343377, gi... - gi\|229518688\|ref\|ZP_04408131.1\| phage shock protein B [Vibrio cholerae RC9], gi\|229343377\|gb\|EEO0835... gi\|229515069, gi... - gi\|229515069\|ref\|ZP_04404529.1\| phage shock protein B [Vibrio cholerae TMA 21], gi\|229347774\|gb\|EEO1... gi\|229508212, gi... - gi\|229508212\|ref\|ZP_04397717.1\| phage shock protein B [Vibrio cholerae BX 330286], gi\|229355717\|gb\|E... gi\|15641681, gi\|... - gi\|9656193\|gb\|AAF94827.1\| phage shock protein B [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1... gi\|227009716, gi... - gi\|227081828\|ref\|YP_002810379.1\| phage shock protein B [Vibrio cholerae M66-2], gi\|227009716\|gb\|ACP0... gi\|11355795 - pir\|\|G82169 phage shock protein B VC1677 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|121630307, gi... - gi\|75815665\|ref\|ZP_00746163.1\| hypothetical protein VchoV_01001692 [Vibrio cholerae V52], gi\|1217273... gi\|121548801, gi... - gi\|121586966\|ref\|ZP_01676745.1\| phage shock protein B [Vibrio cholerae 2740-80], gi\|121548801\|gb\|EAX... gi\|153221776, gi... - gi\|153221776\|ref\|ZP_01952661.1\| phage shock protein B [Vibrio cholerae MAK 757], gi\|124119398\|gb\|EAY... gi\|124123447, gi... - gi\|153800977\|ref\|ZP_01955563.1\| phage shock protein B [Vibrio cholerae MZO-3], gi\|124123447\|gb\|EAY42... gi\|126512323, gi... - gi\|153817174\|ref\|ZP_01969841.1\| phage shock protein B [Vibrio cholerae NCTC 8457], gi\|126512323\|gb\|E... gi\|126520626, gi... - gi\|229511549\|ref\|ZP_04401028.1\| phage shock protein B [Vibrio cholerae B33], gi\|229351514\|gb\|EEO1645...	130.0	[0..1]	[77..1]
tr\|D7H9F5\|D7H9F5... - Phage shock protein B OS=Vibrio cholerae RC385 GN=VCRC385_02144 PE=4 SV=1 gi\|116217678, gi... - gi\|75824408\|ref\|ZP_00753863.1\| hypothetical protein VchoR_01000506 [Vibrio cholerae RC385], gi\|11621...	128.0	[0..1]	[77..1]
gi\|37198321, gi\|... - gi\|37679577\|ref\|NP_934186.1\| phage shock protein B [Vibrio vulnificus YJ016], gi\|37198321\|dbj\|BAC941... gi\|27362357, gi\|... - gi\|27366157\|ref\|NP_761685.1\| phage shock protein B [Vibrio vulnificus CMCP6], gi\|27362357\|gb\|AAO1121...	125.0	[0..1]	[77..1]
gi\|91225995, gi\|... - gi\|91225995\|ref\|ZP_01260922.1\| phage shock protein B [Vibrio alginolyticus 12G01], gi\|91189436\|gb\|EA...	124.0	[0..1]	[77..1]
gi\|28806162, gi\|... - gi\|28897948\|ref\|NP_797553.1\| phage shock protein B [Vibrio parahaemolyticus RIMD 2210633], gi\|288061... gi\|28806162 - gi\|28806162\|dbj\|BAC59437.1\| phage shock protein B [Vibrio parahaemolyticus RIMD 2210633] gi\|153837504, gi... - gi\|153837504\|ref\|ZP_01990171.1\| phage shock protein B [Vibrio parahaemolyticus AQ3810], gi\|149749198...	124.0	[0..1]	[77..1]
gi\|75855695, gi\|... - gi\|75855695\|ref\|ZP_00763339.1\| hypothetical protein VEx2w_01002214 [Vibrio sp. Ex25], gi\|116184962\|r...	123.0	[0..1]	[77..1]
gi\|86147061, gi\|... - gi\|86147061\|ref\|ZP_01065378.1\| phage shock protein B [Vibrio sp. MED222], gi\|85835126\|gb\|EAQ53267.1\|...	118.0	[0..1]	[77..1]
gi\|84391775, gi\|... - gi\|84391775\|ref\|ZP_00991677.1\| Phage shock protein B [Vibrio splendidus 12B01], gi\|84376488\|gb\|EAP93...	117.0	[0..1]	[77..1]
gi\|10719745 - gi\|10719745\|gb\|AAG22114.1\| phage shock protein B [Yersinia enterocolitica] gi\|123442381, gi... - gi\|123442381\|ref\|YP_001006360.1\| phage shock protein B [Yersinia enterocolitica subsp. enterocolitic...	117.0	[0..1]	[73..1]
gi\|77979532 - gi\|77979532\|ref\|ZP_00834950.1\| hypothetical protein YintA_01000713 [Yersinia intermedia ATCC 29909]	117.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMDILMAPI IIFMIVVAPI WLVLHYRSKR QVSQGLTEEE FSQLNDLIAK ADKMAARIET  60
   61 LEAILDSESP EWRGKHERN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.657577
Match:	PF06667.3
Description:	No description for PF06667.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits