YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347638, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347638, gi|....

Description	E-value	Query Range	Subject Range
gi\|47229711 - gi\|47229711\|emb\|CAG06907.1\| unnamed protein product [Tetraodon nigroviridis]	132.0	[0..1]	[225..833]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	131.0	[0..1]	[225..1826]
gi\|47940239 - gi\|47940239\|gb\|AAH72094.1\| LOC432141 protein [Xenopus laevis]	127.0	[0..1]	[225..819]
gi\|42556325 - gi\|42556325\|gb\|AAS19751.1\| myosin heavy chain [Gasterosteus aculeatus]	126.0	[0..1]	[219..826]
gi\|45506700, gi\|... - gi\|75906386\|ref\|YP_320682.1\| phage shock protein A, PspA [Anabaena variabilis ATCC 29413], gi\|757001...	115.0	[0..1]	[218..1]
gi\|186684091, gi... - gi\|23126177\|ref\|ZP_00108081.1\| COG1842: Phage shock protein A (IM30), suppresses sigma54-dependent t...	115.0	[0..1]	[217..1]
gi\|25315831 - pir\|\|AG2098 hypothetical protein all2342 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229834, gi\|... - gi\|17229834\|ref\|NP_486382.1\| hypothetical protein all2342 [Nostoc sp. PCC 7120], gi\|17131434\|dbj\|BAB...	114.0	[0..1]	[218..1]
gi\|74180466 - gi\|74180466\|dbj\|BAE34176.1\| unnamed protein product [Mus musculus]	108.0	[0..1]	[178..822]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFSRFADI INSNISALLD KAEDPEKMVR LIIQEMEDTL VEVRSTSAKV LAEKKELHRR  60
   61 ISRVEEQVQD WQDKAELALS KDREDLAKAA LVEKQKAAGL VDTLNQELAV LDEHIARLKD 120
  121 EVSLLQEKLL DAKARQKTII LRTQTASSRL EVKKQLDSSK IDNAMLKFEQ YERRVEGLEA 180
  181 QVESYDLGSK KTLADEFAAL EAEDSVNAEL EALKAKVKGK APTKSKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.154902
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits