YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347629, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347629, gi|....

Description	E-value	Query Range	Subject Range
gi\|146296065, gi... - gi\|82500758\|ref\|ZP_00886157.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	349.0	[0..1]	[260..1]
gi\|56908581, gi\|... - gi\|56962344\|ref\|YP_174069.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	345.0	[0..1]	[259..37]
gi\|25297027 - pir\|\|E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodura... gi\|15616207, gi\|... - gi\|15616207\|ref\|NP_244512.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus halodurans C...	344.0	[0..1]	[259..1]
gi\|89100170, gi\|... - gi\|89100170\|ref\|ZP_01173038.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus sp. NRRL B...	343.0	[0..1]	[259..9]
gi\|78044045, gi\|... - gi\|78044045\|ref\|YP_359973.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Carboxydot...	342.0	[0..1]	[259..1]
gi\|50843594, gi\|... - gi\|50843594\|ref\|YP_056821.1\| putative peptide ABC transporter, ATP-binding protein [Propionibacteriu...	338.0	[0..2]	[259..10]
gi\|23099907, gi\|... - gi\|23099907\|ref\|NP_693373.1\| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyen...	338.0	[0..2]	[259..5]
gi\|89158826, gi\|... - gi\|89211579\|ref\|ZP_01189937.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	337.0	[0..3]	[259..6]
gi\|88925013, gi\|... - gi\|88945338\|ref\|ZP_01148515.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	337.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPLLKVND LFKRYDTGYK GFTRQYNDAL APVSFELNRG ETLAIVGEAG SGKSTLARIL  60
   61 VGAEPRSGGE IYFEGEALDS RNIKQRCRLI RMIFQDPNTS LNPRLTIGQL LDEPLRFNTQ 120
  121 LSAKERNTQV IDTLRKVGLL PEHSDFYPHM ISEGQKQRVA VARALMLNPK IIIADEALTA 180
  181 LDLSVRSQIL NLLLKLQKDL GLSYIFVSHN LNIIRHVSDK IMVLHKGVMV EKAPTEQIFN 240
  241 SPQHEYTQRL VQEQSLFVHK R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.30103
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits