YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347590, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	533 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347590, gi|....

Description	E-value	Query Range	Subject Range
gi\|108869263, gi... - gi\|157104119\|ref\|XP_001648263.1\| aromatic amino acid decarboxylase [Aedes aegypti], gi\|108869263\|gb\|...	334.0	[0..4]	[520..1]
gi\|50347093 - gi\|50347093\|gb\|AAT75222.1\| dopa decarboxylase [Armigeres subalbatus]	334.0	[0..4]	[520..1]
gi\|38564807 - gi\|38564807\|gb\|AAR23825.1\| dopa-decarboxylase [Antheraea pernyi]	332.0	[0..18]	[519..6]
gi\|15824041 - gi\|15824041\|dbj\|BAB68549.1\| dopa decarboxylase [Mythimna separata]	331.0	[0..13]	[520..1]
gi\|38564805 - gi\|38564805\|gb\|AAR23824.1\| dopa-decarboxylase [Antheraea yamamai]	331.0	[0..18]	[519..6]
gi\|112984466, gi... - gi\|13899133\|gb\|AAK48988.1\|AF372836_1 dopa decarboxylase [Bombyx mori], gi\|112984466\|ref\|NP_001037174...	330.0	[0..18]	[519..6]
gi\|15799267 - gi\|15799267\|dbj\|BAB68545.1\| dopa decarboxylase [Mamestra brassicae]	330.0	[0..13]	[520..1]
gi\|74038582 - gi\|74038582\|dbj\|BAE43825.1\| dopa decarboxylase [Papilio xuthus]	327.0	[0..13]	[519..1]

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Predicted Domain #1

Region A:
Residues: [1-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFTVPEDA DSTLSIIEQK LSEDLAGFLG DSIAALEKPL SEIETDFQTF EIPNQPRFVS  60
   61 DYTDEIMQNL VAHSVHTAAP SFIGHMTSAL PYFVLPLSKM MVGLNQNLVK IETSKAFTPL 120
  121 ERQVLGMMHH LIYAQHDDFY RNWMHSANHS LGAFCSGGTV ANITALWIAR NQLLKADGDF 180
  181 KGVTREGLIK ALRHYDYDDL AILVSERGHY SLGKAVDLLG IGRDNIISIP TDADNKVDVT 240
  241 QMRKIAVELA HKRIKVMAIV GVAGTTETGN IDPLKQLAAL ASELNCHFHV DAAWGGASLL 300
  301 SNKYRHLLDG VELADSVTID AHKQMYVPMG AGMVLFKNPE FAHAIAHHAE YILRRGSKDL 360
  361 GSQTLEGSRP GMAMLVHACL QIIGRDGYEI LINNSLEKAR YFAEQIDAHP DFELVTAPEL 420
  421 CLLTYRYVPA SVQAAMQVAI EQGDKAKLER FNEQLDGLTQ FIQKHQREQG KSFVSRTRIQ 480
  481 PARYFRQPTV VFRVVLANPL TSHEILNQVL IEQGEIATLD KEFLPALLAM VAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.045757
Match:	2okjA
Description:	No description for 2okjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits