YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347572, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	573 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347572, gi|....

Description	E-value	Query Range	Subject Range
gi\|113970876, gi... - gi\|82496462\|ref\|ZP_00882030.1\| phosphoglucomutase/phosphomannomutase family protein [Shewanella sp. ...	528.0	[0..1]	[573..1]
gi\|114048100, gi... - gi\|78689430\|ref\|ZP_00854092.1\| phosphoglucomutase/phosphomannomutase family protein [Shewanella sp. ...	528.0	[0..1]	[573..1]
gi\|78685553, gi\|... - gi\|78685553\|ref\|ZP_00850330.1\| phosphoglucomutase/phosphomannomutase family protein [Shewanella sp. ...	525.0	[0..1]	[573..1]
gi\|116221480, gi... - gi\|75820772\|ref\|ZP_00750812.1\| COG1109: Phosphomannomutase [Vibrio cholerae V51], gi\|254224687\|ref\|Z...	510.0	[0..5]	[571..1]
gi\|120599451, gi... - gi\|82741593\|ref\|ZP_00904311.1\| phosphoglucomutase/phosphomannomutase family protein [Shewanella sp. ...	505.0	[0..1]	[573..1]
gi\|160860229, gi... - gi\|160874707\|ref\|YP_001554023.1\| phosphoglucomutase/phosphomannomutase alpha/beta/subunit [Shewanell...	505.0	[0..1]	[573..1]
gi\|59711663, gi\|... - gi\|59711663\|ref\|YP_204439.1\| phosphoglucomutase [Vibrio fischeri ES114], gi\|59479764\|gb\|AAW85551.1\| ...	504.0	[0..5]	[571..1]
gi\|68540475, gi\|... - gi\|68540475\|ref\|ZP_00580226.1\| Phosphoglucomutase/phosphomannomutase C terminal:Phosphoglucomutase/p...	504.0	[0..1]	[573..1]
gi\|90441212, gi\|... - gi\|90578126\|ref\|ZP_01233937.1\| putative phosphomannomutase [Vibrio angustum S14], gi\|90441212\|gb\|EAS...	503.0	[0..5]	[571..1]
gi\|77812881, gi\|... - gi\|77812881\|ref\|ZP_00812164.1\| Phosphoglucomutase/phosphomannomutase C terminal:Phosphoglucomutase/p...	503.0	[0..1]	[573..1]

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Predicted Domain #1

Region A:
Residues: [1-573]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTHLQLQIQ HWLKNDPDPS TQAQLQALID SGNEAELAAR FAGRLEFGTA GLRGVVGAGP  60
   61 MGMNRLVIRQ TSAGLGAYLL EQIHDVAERG VVIGYDGRHD SYTFAHDTAS VLTAMGIKVR 120
  121 LTAKVAPTPL VAFGVKHFNA AAGIVVTASH NPPQYNGYKV YWENGAQIIP PHDSGIAAKI 180
  181 EQAATQAIPF MELDDAIKQG KLIWLNDDYY ETYRRGVMHA KVLQNHTAPE KVSLAYTAMH 240
  241 GVGADMAETV LKDAGFTQVY SVAAQREPDG DFPTVNFPNP EEKGAMDLVI AEAKKHSAML 300
  301 ACANDPDADR FAVAVRKDDG EYQMLTGDQV GVLFGHYLLS HASADQRLVG TTIVSSSLLS 360
  361 KIANGFGVES YTTLTGFKWL MNVGIAQSQP DNQFLFAYEE ALGYTVGNMV WDKDGLSALV 420
  421 AFAQLTAELA AKGQTIWDRL EQIYREQGFH LNAQASIALK PETPNIGAYL REHPPLTIGE 480
  481 HAVVSTDDLK ALSRRFADGK VENINLPASD VLTYRLSNGA RVIVRPSGTE PKIKCYYEVV 540
  541 EPMTAQDTLA TAQARATQAM EAFISAHQAS LPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1wqaA
Description:	Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits