YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373275, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373275, gi|....

Description	E-value	Query Range	Subject Range
gi\|150016972, gi... - gi\|82747995\|ref\|ZP_00910486.1\| 4-hydroxybutyrate coenzyme A transferase [Clostridium beijerincki NCI...	460.0	[0..2]	[428..11]
gi\|34540486, gi\|... - gi\|34540486\|ref\|NP_904965.1\| 4-hydroxybutyrate CoA-transferase [Porphyromonas gingivalis W83], gi\|34...	450.0	[0..6]	[425..12]
gi\|28210230, gi\|... - gi\|28210230\|ref\|NP_781174.1\| 4-hydroxybutyrate coenzyme A transferase [Clostridium tetani E88], gi\|2...	443.0	[0..2]	[424..8]
gi\|34763077, gi\|... - gi\|34763077\|ref\|ZP_00144049.1\| 4-hydroxybutyrate:acetyl-CoA CoA transferase [Fusobacterium nucleatum...	441.0	[0..3]	[425..10]
gi\|1228101\|gb\|AA... - 4-hydroxybutyrate coenzyme A transferase CAT2_CLOKL - 4-hydroxybutyrate coenzyme A transferase - Clostridium kluyveri	436.0	[0..3]	[424..8]
gi\|78195740, gi\|... - gi\|78224485\|ref\|YP_386232.1\| Acetyl-CoA hydrolase/transferase [Geobacter metallireducens GS-15], gi\|...	433.0	[0..5]	[423..18]
gi\|76096774 - gi\|76096774\|gb\|ABA39275.1\| 4-hydroxybutyrate CoA-transferase [Anaerostipes caccae]	433.0	[0..5]	[424..16]
gi\|55981417, gi\|... - gi\|55981417\|ref\|YP_144714.1\| 4-hydroxybutyrate CoA-transferase [Thermus thermophilus HB8], gi\|557728...	428.0	[0..4]	[423..5]
gi\|89893379, gi\|... - gi\|89893379\|ref\|YP_516866.1\| hypothetical protein DSY0633 [Desulfitobacterium hafniense Y51], gi\|893... gi\|219536930, gi... - gi\|68205404\|ref\|ZP_00557607.1\| Acetyl-CoA hydrolase/transferase [Desulfitobacterium hafniense DCB-2]...	427.0	[0..3]	[428..8]
gi\|19714134, gi\|... - gi\|19714134\|gb\|AAL94817.1\| 4-hydroxybutyrate coenzyme A transferase [Fusobacterium nucleatum subsp. ...	427.0	[0..2]	[425..9]

Back

Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAIVCQSAL EAVSLIRSGE TLWTHSMGAT PKVLLDALAK HALTLDNITL LQLHTEGAES  60
   61 LSHPSLLGHL RHRCFFGGVP TRPLLQSGDA DYVPIFLSEV PKLFRSGEQK IDTAIIQVSP 120
  121 PDKHGMCSLG ISVEATLAAC QVAGKIIAHI NPQMPRTHGD GFIHIDRFAA VYEQSASLPI 180
  181 HSFATGDAVS LAIGQHVAEL VRDGDCLQMG IGAIPDAVLS CLTGHKDLGV HTELFSDGIL 240
  241 QLVEKGVINN TKKRFYPGKL VTGFALGSQK LYDYVDDNPA VIFMDIEQVN DTSIIRKNPN 300
  301 VMAINSALQV DLTGQVCADS IGTKIYSGVG GQMDFIRGAG LSEGGRSVIA LPSTAAGGRI 360
  361 SRIASVLSPG AGVVTTRAHV HYIVTEYGAA NLKGRSLRER AQALINIAHP DFREQLSRDA 420
  421 FEVWGLNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	2oasA
Description:	No description for 2oasA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits