YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347484, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347484, gi|....

Description	E-value	Query Range	Subject Range
gi\|110750101 - gi\|110750101\|ref\|XP_623606.2\| PREDICTED: similar to 3-hydroxyisobutyrate dehydrogenase, mitochondria...	218.0	[0..3]	[296..20]
3HIDH_DICDI - Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 ... gi\|66801237, gi\|... - gi\|66801237\|ref\|XP_629544.1\| 3-hydroxyisobutyrate dehydrogenase [Dictyostelium discoideum AX4], gi\|6...	217.0	[0..2]	[297..23]
gi\|47125249, gi\|... - gi\|47125249\|gb\|AAH70849.1\| MGC84587 protein [Xenopus laevis], gi\|147898679\|ref\|NP_001084759.1\| hypot...	216.0	[0..4]	[296..35]
gi\|27820088 - gi\|27820088\|gb\|AAL39202.2\| GH06781p [Drosophila melanogaster]	216.0	[0..2]	[299..50]
gi\|26347027 - gi\|26347027\|dbj\|BAC37162.1\| unnamed protein product [Mus musculus]	214.0	[0..4]	[296..41]
gi\|56419562, gi\|... - gi\|56419562\|ref\|YP_146880.1\| 3-hydroxyisobutyrate dehydrogenase [Geobacillus kaustophilus HTA426], g...	214.0	[0..1]	[298..1]
gi\|194109744, gi... - gi\|195149909\|ref\|XP_002015897.1\| GL11305 [Drosophila persimilis], gi\|194109744\|gb\|EDW31787.1\| GL1130... gi\|54635579\|gb\|E... - GA13484-PA [Drosophila pseudoobscura], GA13484 [Drosophila pseudoobscura pseudoobscura] gi\|54635579, gi\|... - gi\|54635579\|gb\|EAL24982.1\| GA13484 [Drosophila pseudoobscura pseudoobscura], gi\|125807465\|ref\|XP_001...	214.0	[0..2]	[299..30]
gi\|88818264, gi\|... - gi\|88859247\|ref\|ZP_01133887.1\| 3-hydroxyisobutyrate dehydrogenase [Pseudoalteromonas tunicata D2], g...	214.0	[0..1]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVAFIGLG NMGGPMAANL LKAGMTVRVF DLVHTAMQTL AEQGALVSST ACGAAAGANV  60
   61 VITMLPAGKH VKNLYLGSGS EKGLLDVVAS DTLLIDCSTI DAQSAQLVAT QAAKNGLEFM 120
  121 DAPVSGGTSG AAAGTLTFIC GGSDTAFERA QPVLNAMGKN IFHAGGPGAG QIAKICNNML 180
  181 LSVLMVGTSE ALQMGIDHGL DPKVLSNIMK VSSGGNWTLE KYNPCPGVME NVPSSKGYQG 240
  241 GFMVDLMVKD LGLSFEAALL SNSSTPMGAL ARSLYVSHAR QGNGHRDFSS IFEQFAPLKK 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	2i9pA
Description:	No description for 2i9pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits