YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347483, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347483, gi|....

Description	E-value	Query Range	Subject Range
HIBCH_CHICK - 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1	332.0	[0..21]	[379..36]
HIBCH - 3-hydroxyisobutyryl-CoA hydrolase	323.0	[0..12]	[377..28]
gi\|109100395 - gi\|109100395\|ref\|XP_001103467.1\| PREDICTED: similar to 3-hydroxyisobutyryl-Coenzyme A hydrolase isof...	320.0	[0..12]	[377..86]
gi\|72105061, gi\|... - gi\|72105061\|ref\|XP_791196.1\| PREDICTED: similar to 3-hydroxyisobutyryl-Coenzyme A hydrolase [Strongy...	319.0	[0..12]	[377..21]
gi\|114582259 - gi\|114582259\|ref\|XP_515988.2\| PREDICTED: 3-hydroxyisobutyryl-Coenzyme A hydrolase [Pan troglodytes]	318.0	[0..12]	[377..82]
HIBCH_MOUSE - 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1	318.0	[0..21]	[377..36]
gi\|74005032 - gi\|74005032\|ref\|XP_848689.1\| PREDICTED: similar to 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform ...	314.0	[0..21]	[377..10]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLVDKAAH SFATQNVVFQ TLATASGKLV GVVTLNVEKA LNALDLDMVR AMTVQLNLWK  60
   61 KDPLIACVVL DGSGEKAFCA GGDVRALYHA SVAAKGQVTE VAKVFFEEEY RLDYLLHTYG 120
  121 KPVLVWGDGI VMGGGLGLMA GASHKVVTET SRIAMPEVTI GLYPDVGGSY FLNRMPGKMG 180
  181 LFLGLTAYHM NAADACYVGL ADHYLNRDDK ELMFDAMATL DWSDSPALNH QRLDTMINEL 240
  241 SNQVDIPKGD SVLAESQEMI DRLMAGSLTD IVTRMSTLST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.522879
Match:	2hw5A
Description:	No description for 2hw5A was found.

Predicted Domain #2

Region A:
Residues: [281-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEAWLSKACA TMLAGSPISW HLAYIQTQLG TKLSLAQCFK WELTVSVNVC AKGDFCEGVR  60
   61 ALLIDKDKQP KWQFADVQSV PNSVIEDILT SPWGEEHPLS QLS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.66
Match:	1nzyA
Description:	4-Chlorobenzoyl-CoA dehalogenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits