YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347476, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347476, gi|....

Description	E-value	Query Range	Subject Range
gi\|77996685, gi\|... - gi\|78044570\|ref\|YP_360188.1\| acetyl-CoA acetyltransferase [Carboxydothermus hydrogenoformans Z-2901]...	364.0	[0..7]	[395..1]
gi\|115251727, gi... - gi\|126700290\|ref\|YP_001089187.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile 630], ...	364.0	[0..7]	[394..1]
gi\|90573693, gi\|... - gi\|90573693\|ref\|ZP_01230204.1\| hypothetical protein CdifQ_02002956 [Clostridium difficile QCD-32g58]... gi\|255518068 - gi\|255518068\|ref\|ZP_05385744.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-97b... gi\|255651184 - gi\|255651184\|ref\|ZP_05398086.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-37x... gi\|254976268 - gi\|254976268\|ref\|ZP_05272740.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-66c... gi\|255093654 - gi\|255093654\|ref\|ZP_05323132.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile CIP 107... gi\|255315403 - gi\|255315403\|ref\|ZP_05356986.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-76w...	363.0	[0..7]	[394..1]
gi\|28202508, gi\|... - gi\|28210073\|ref\|NP_781017.1\| acetyl-CoA acetyltransferase [Clostridium tetani E88], gi\|28202508\|gb\|A...	360.0	[0..7]	[395..1]
gi\|3309206 - gi\|3309206\|gb\|AAC26026.1\| thiolase B [Clostridium acetobutylicum] gi\|14994394, gi\|... - gi\|3309206\|gb\|AAC26026.1\| thiolase B [Clostridium acetobutylicum], gi\|15004782\|ref\|NP_149242.1\| acet...	359.0	[0..7]	[395..1]
gi\|82725156, gi\|... - gi\|82747075\|ref\|ZP_00909576.1\| Thiolase [Clostridium beijerincki NCIMB 8052], gi\|82725156\|gb\|EAP5990...	353.0	[0..7]	[395..1]
gi\|13622708, gi\|... - gi\|15675510\|ref\|NP_269684.1\| putative acetyl-CoA:acetyltransferase [Streptococcus pyogenes M1 GAS], ... gi\|71853939, gi\|... - gi\|71911157\|ref\|YP_282707.1\| acetyl-CoA acetyltransferase [Streptococcus pyogenes MGAS5005], gi\|7185...	351.0	[0..7]	[394..1]
gi\|50914736, gi\|... - gi\|50914736\|ref\|YP_060708.1\| Acetyl-CoA acetyltransferase [Streptococcus pyogenes MGAS10394], gi\|509...	351.0	[0..7]	[394..1]
gi\|56808838 - gi\|56808838\|ref\|ZP_00366550.1\| COG0183: Acetyl-CoA acetyltransferase [Streptococcus pyogenes M49 591...	350.0	[0..6]	[395..1]

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Predicted Domain #1

Region A:
Residues: [1-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTELLNQEI VIVAAKRTPM GSFQGSLSGI TSLSLAATAI KALLADTQVA PDKVDEVLMG  60
   61 CVLPAGLGQA PARQATLGAG LPLSVGATTV NKVCGSGMKT VMLAHDLIKA GSAKVVIAGG 120
  121 MESMSQAPYL LDKARAGIRM GHGKVLDHMF LDGLEDAYTG GAMGTFAQKT ADEFGITREQ 180
  181 MDAFALSSLE KANAAINSGA FKTEIVPVTV SDRRGDVTID TDEQPGNARP EKIPTLRPAF 240
  241 AKDGTITAAN SSSISDGAAA LMLTTRANAE QLGLTVLATI KGHTTHAQEP ALFTTAPVGA 300
  301 MAKLLSNVGW SKDEVDLFEI NEAFAMVTML AVSELGLDMT KVNVNGGACA LGHPIGCSGA 360
  361 RLLVTLIHAL KARGLKRGVA SLCIGGGEAT AMAIEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.045757
Match:	1wl4A
Description:	Human cytosolic acetoacetyl-CoA thiolase complexed with CoA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits