YRC Public Data Repository - Protein Structure Prediction

Protein:	META_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	313 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for META_SHEON.

Description	E-value	Query Range	Subject Range
META_BACHD - Homoserine O-succinyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344... META_BACHD - Homoserine O-succinyltransferase OS=Bacillus halodurans GN=metA PE=3 SV=1	528.0	[0..1]	[302..1]
META_CLOTH - Homoserine O-succinyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 10...	527.0	[0..1]	[304..1]
META_SHESR - Homoserine O-succinyltransferase OS=Shewanella sp. (strain MR-7) GN=metA PE=3 SV=1 META_SHESM - Homoserine O-succinyltransferase OS=Shewanella sp. (strain MR-4) GN=metA PE=3 SV=1	524.0	[0..1]	[313..1]
META_SHESW - Homoserine O-succinyltransferase OS=Shewanella sp. (strain W3-18-1) GN=metA PE=3 SV=1 META_SHEPC - Homoserine O-succinyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=metA PE... gi\|124509067, gi... - gi\|124547666\|ref\|ZP_01706522.1\| homoserine O-succinyltransferase [Shewanella putrefaciens 200], gi\|1...	521.0	[0..1]	[313..1]
META_SHESA - Homoserine O-succinyltransferase OS=Shewanella sp. (strain ANA-3) GN=metA PE=3 SV=1	519.0	[0..1]	[313..1]
META_SHEB5 - Homoserine O-succinyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=metA PE=3 S... META_SHEB8 - Homoserine O-succinyltransferase OS=Shewanella baltica (strain OS185) GN=metA PE=3 SV=1 META_SHEB2 - Homoserine O-succinyltransferase OS=Shewanella baltica (strain OS223) GN=metA PE=3 SV=1	516.0	[0..1]	[313..1]
META_VIBCH - Homoserine O-succinyltransferase OS=Vibrio cholerae GN=metA PE=3 SV=2 gi\|75815630 - gi\|75815630\|ref\|ZP_00746129.1\| COG1897: Homoserine trans-succinylase [Vibrio cholerae V52] META_VIBCH - Homoserine O-succinyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N1... gi\|229347711, gi... - gi\|229515006\|ref\|ZP_04404466.1\| homoserine O-succinyltransferase [Vibrio cholerae TMA 21], gi\|229347...	516.0	[0..1]	[305..1]
META_SHEB9 - Homoserine O-succinyltransferase OS=Shewanella baltica (strain OS195) GN=metA PE=3 SV=1	515.0	[0..1]	[313..1]
gi\|153214679, gi... - gi\|153214679\|ref\|ZP_01949539.1\| homoserine O-succinyltransferase [Vibrio cholerae 1587], gi\|12411520... gi\|124118353, gi... - gi\|153223176\|ref\|ZP_01953698.1\| homoserine O-succinyltransferase [Vibrio cholerae MAK 757], gi\|12411... gi\|124122229, gi... - gi\|153802247\|ref\|ZP_01956833.1\| homoserine O-succinyltransferase [Vibrio cholerae MZO-3], gi\|1241222... gi\|126511328, gi... - gi\|153818142\|ref\|ZP_01970809.1\| homoserine O-succinyltransferase [Vibrio cholerae NCTC 8457], gi\|126... gi\|229511484, gi... - gi\|229511484\|ref\|ZP_04400963.1\| homoserine O-succinyltransferase [Vibrio cholerae B33], gi\|229351449... gi\|9656123, gi\|1... - gi\|9656123\|gb\|AAF94765.1\| homoserine O-succinyltransferase [Vibrio cholerae O1 biovar El Tor str. N1... gi\|11257722 - gi\|11257722\|pir\|\|E82178 homoserine O-succinyltransferase VC1611 [imported] - Vibrio cholerae (strain... gi\|147675666, gi... - gi\|75826968\|ref\|ZP_00756403.1\| COG1897: Homoserine trans-succinylase [Vibrio cholerae O395], gi\|2271... gi\|75829519, gi\|... - gi\|75829519\|ref\|ZP_00758819.1\| COG1897: Homoserine trans-succinylase [Vibrio cholerae MO10], gi\|2548... gi\|229370506, gi... - gi\|229607851\|ref\|YP_002878499.1\| homoserine O-succinyltransferase [Vibrio cholerae MJ-1236], gi\|2293... gi\|229529356, gi... - gi\|229529356\|ref\|ZP_04418746.1\| homoserine O-succinyltransferase [Vibrio cholerae 12129(1)], gi\|2293... gi\|229342458, gi... - gi\|229520634\|ref\|ZP_04410058.1\| homoserine O-succinyltransferase [Vibrio cholerae TM 11079-80], gi\|2... gi\|229343313, gi... - gi\|229518624\|ref\|ZP_04408067.1\| homoserine O-succinyltransferase [Vibrio cholerae RC9], gi\|229343313... gi\|229354398, gi... - gi\|229508444\|ref\|ZP_04397947.1\| homoserine O-succinyltransferase [Vibrio cholerae BX 330286], gi\|229... gi\|227081764, gi... - gi\|227081764\|ref\|YP_002810315.1\| homoserine O-succinyltransferase [Vibrio cholerae M66-2], gi\|227009... gi\|121547367, gi... - gi\|121590804\|ref\|ZP_01678132.1\| homoserine O-succinyltransferase [Vibrio cholerae 2740-80], gi\|12154... gi\|153824834, gi... - gi\|153824834\|ref\|ZP_01977501.1\| homoserine O-succinyltransferase [Vibrio cholerae MZO-2], gi\|1497415... gi\|121629285, gi... - gi\|121728412\|ref\|ZP_01681439.1\| homoserine O-succinyltransferase [Vibrio cholerae V52], gi\|121629285... gi\|148873873, gi... - gi\|153830632\|ref\|ZP_01983299.1\| homoserine O-succinyltransferase [Vibrio cholerae 623-39], gi\|148873...	514.0	[0..1]	[305..7]
META_VIBVU - Homoserine O-succinyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=metA PE=3 SV=1 META_VIBVU - Homoserine O-succinyltransferase OS=Vibrio vulnificus GN=metA PE=3 SV=1	513.0	[0..1]	[305..1]

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Predicted Domain #1

Region A:
Residues: [1-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKIPDHLP AAGILESENI FVMSETRAAN QDIRPMKVLI LNLMPNKIET ETQLLRLLGN  60
   61 TPLQVDVDLL RIHDKESKHT SIDHMNTFYR DFEDVRHKNY DGLIITGAPL GQIDFEDVTY 120
  121 WDHIREIIDW SQQHVTSVLF LCWAAHAGLY HLYGLNRKIL EQKRSGVFVH RRTCQHFPLL 180
  181 RGFDDEFFAP HSRFAEMDVE EIRQHPQLQL LAESDEAGAY LVLSRNNRNL FVMGHPEYQK 240
  241 STLNDEYHRD LAQSLNPNVP QNYYRNDDPK ADAIARWHSH GSLLVSNWLN YYVYQLTPYD 300
  301 LSDMTAMTPW ESQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	145.0
Match:	2h2wA
Description:	No description for 2h2wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits