YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347470, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347470, gi|....

Description	E-value	Query Range	Subject Range
gi\|117921218, gi... - gi\|78685618\|ref\|ZP_00850395.1\| Maleylacetoacetate isomerase [Shewanella sp. ANA-3], gi\|78506736\|gb\|E...	203.0	[0..1]	[216..1]
gi\|113970938, gi... - gi\|82496400\|ref\|ZP_00881968.1\| Maleylacetoacetate isomerase [Shewanella sp. MR-4], gi\|82405549\|gb\|EA...	199.0	[0..1]	[216..1]
gi\|114048162, gi... - gi\|78691330\|ref\|ZP_00855952.1\| Maleylacetoacetate isomerase [Shewanella sp. MR-7], gi\|78509286\|gb\|EA...	198.0	[0..1]	[216..1]
gi\|73540039, gi\|... - gi\|73540039\|ref\|YP_294559.1\| maleylacetoacetate isomerase [Ralstonia eutropha JMP134], gi\|72117452\|g...	195.0	[0..1]	[215..1]
gi\|50540032, gi\|... - gi\|50540032\|ref\|NP_001002481.1\| glutathione transferase zeta 1 isoform 2 [Danio rerio], gi\|49903077\|...	195.0	[0..3]	[214..13]
gi\|50748528 - gi\|50748528\|ref\|XP_421288.1\| PREDICTED: hypothetical protein isoform 3 [Gallus gallus]	194.0	[0..2]	[214..7]
gi\|66816321, gi\|... - gi\|66816321\|ref\|XP_642170.1\| maleylacetoacetate isomerase [Dictyostelium discoideum AX4], gi\|6047027... MAAI_DICDI - Maleylacetoacetate isomerase OS=Dictyostelium discoideum GN=mai PE=3 SV=1	193.0	[0..3]	[215..8]
gi\|113525168, gi... - gi\|113866392\|ref\|YP_724881.1\| maleylacetoacetate isomerase [Ralstonia eutropha H16], gi\|113525168\|em...	193.0	[0..1]	[215..2]
gi\|115377235, gi... - gi\|115377235\|ref\|ZP_01464446.1\| maleylacetoacetate isomerase [Stigmatella aurantiaca DW4/3-1], gi\|11...	192.0	[0..1]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILYGYWRSS AAYRVRIALN LKGVSAEQLS VHLVRDGGEQ HKADYIALNP QELVPTLVVD  60
   61 DEQDGDALTQ SLAIIEYLDE LYPKTPLLPA SALERAHVRA MALTIACEIH PLNNLRVLQY 120
  121 LTQKLTVNEE AKSAWYHHWV ATGFTALETQ LVRHSGRYCF GDKVTIADLC LVPQVYNAQR 180
  181 FNVDLTPYPN IMRVWAECNQ LPAFADAAPE RQADAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	2cz2A
Description:	Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-1 crystal)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits