YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347463, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347463, gi|....

Description	E-value	Query Range	Subject Range
gi\|114636420 - gi\|114636420\|ref\|XP_521852.2\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]	420.0	[0..10]	[269..162]
gi\|109107139 - gi\|109107139\|ref\|XP_001083991.1\| PREDICTED: similar to tryptophan hydroxylase 1 [Macaca mulatta]	420.0	[0..10]	[269..152]
TPH1_CHICK - Tryptophan 5-hydroxylase 1 OS=Gallus gallus GN=TPH1 PE=1 SV=1	419.0	[0..10]	[269..153]
gi\|73988890 - gi\|73988890\|ref\|XP_854768.1\| PREDICTED: similar to tryptophan hydroxylase 1 [Canis familiaris]	418.0	[0..10]	[269..193]
TPH1 - tryptophan hydroxylase 1	411.0	[0..10]	[269..152]
TPH_XENLA - Tryptophan 5-hydroxylase OS=Xenopus laevis GN=tph PE=2 SV=1	410.0	[0..13]	[269..192]
gi\|57761 - gi\|57761\|emb\|CAA37579.1\| unnamed protein product [Rattus rattus] TPH1_RAT - Tryptophan 5-hydroxylase 1 OS=Rattus norvegicus GN=Tph1 PE=2 SV=2	410.0	[0..10]	[269..152]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIDTVHTAP YVARSADDSG YIHYPQEEHD IWRQLYARQA VNLPGRACKE YLQGLDALAM  60
   61 PKDRIPQLAE IDKVLMATTG WKTADVPALI SFGRFFELLA NKEFPVATFI RRKEEFDYLQ 120
  121 EPDIFHEIFG HCPLLTNPSF AHFSHMYGQL GLNASKEDRV FLARLYWFTV EFGLLKPQEG 180
  181 ELCIYGGGIL SSPGETLYAM ESQVPERKPF DLLDVLRTPY RIDIMQPIYY VIEHIDVLDE 240
  241 IAKMDIMAYV AKARQLGLFA PKYPPKAKKA S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.39794
Match:	2v28A
Description:	No description for 2v28A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits