YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373233, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373233, gi|....

Description	E-value	Query Range	Subject Range
gi\|42519467, gi\|... - gi\|42519467\|ref\|NP_965397.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus johnsonii N...	273.0	[0..5]	[302..2]
gi\|23002796 - gi\|23002796\|ref\|ZP_00046469.1\| COG1210: UDP-glucose pyrophosphorylase [Lactobacillus gasseri] gi\|227521298, gi... - gi\|227521298\|ref\|ZP_03951347.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus gasseri ... gi\|116629360, gi... - gi\|23002796\|ref\|ZP_00046469.1\| hypothetical protein Lgas_03000721 [Lactobacillus gasseri ATCC 33323]...	271.0	[0..5]	[302..2]
gi\|170715822, gi... - gi\|170715822\|gb\|EDT28004.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens CPE... gi\|170712761, gi... - gi\|170712761\|gb\|EDT24943.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens B s... gi\|18144169, gi\|... - gi\|18309492\|ref\|NP_561426.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens st... gi\|110674009, gi... - gi\|110799362\|ref\|YP_694942.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens A...	270.0	[0..3]	[297..2]
gi\|227903507, gi... - gi\|227903507\|ref\|ZP_04021312.1\| UTP-glucose-1-phosphate uridylyltransferase [Lactobacillus acidophil... gi\|58254267, gi\|... - gi\|58336950\|ref\|YP_193535.1\| UTP-glucose-1-phosphate uridylyltransferase [Lactobacillus acidophilus ...	269.0	[0..5]	[302..2]
gi\|54309834, gi\|... - gi\|54309834\|ref\|YP_130854.1\| putative UTP-glucose-1-phosphateuridylyltransferase, galU [Photobacteri...	268.0	[0..2]	[294..4]
gi\|76590943, gi\|... - gi\|76793761\|ref\|ZP_00776243.1\| UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal ...	268.0	[0..3]	[299..1]
gi\|90410778, gi\|... - gi\|90410778\|ref\|ZP_01218793.1\| putative glucose-1-phosphate uridylyltransferase [Photobacterium prof...	267.0	[0..2]	[301..3]
gi\|56381646, gi\|... - gi\|56421804\|ref\|YP_149122.1\| UTP-glucose-1-phosphate uridylyltransferase (uridine diphosphoglucose p...	267.0	[0..3]	[302..1]
gi\|110684193, gi... - gi\|110803692\|ref\|YP_697798.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens S...	266.0	[0..3]	[297..2]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQHQIRKAV IPVAGLGTRM LPATKAIPKE MLPVVDKPLI QYVVSEAIAA GIKEIVLVTH  60
   61 ASKNSIENHF DTSFELEAQL ERRVKRQLLE AVQSICPKDV TVISVRQSQA KGLGHAILCA 120
  121 KSVVGDAPFA VLLPDVIIDE ASCDLKTDNL ASMVSLFDET QVGQIMVEGV PHHLVNQYGI 180
  181 ADVNGHDLQP GESEPLVELV EKPPVDEAPS NLAVVGRYVL PAAIWPLLAK TPAGAGDEIQ 240
  241 LTDAIAMLMK EETVNAYYMQ GKSHDCGNKQ GYMRANVEYA LRHSEIGEDF AHYLKTVVKG 300
  301 IK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	2e3dA
Description:	No description for 2e3dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits