YRC Public Data Repository - Protein Structure Prediction

Protein:	LPXD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPXD_SHEON.

Description	E-value	Query Range	Subject Range
LPXD_PSEPK - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas putida (strain KT2440) GN=lpxD PE=3 SV=1	230.0	[0..3]	[339..4]
LPXD_PSEP1 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lpxD PE...	229.0	[0..3]	[339..4]
LPXD_PSESM - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=lpxD... LPXD_PSESM - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase OS=Pseudomonas syringae pv. tomato GN=lpx... gi\|213969128, gi... - gi\|213969128\|ref\|ZP_03397267.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Pseudomo...	225.0	[0..3]	[339..4]
LPXD_VIBCH - UDP-3-O-acylglucosamine N-acyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor... gi\|124119814, gi... - gi\|153221285\|ref\|ZP_01952300.1\| UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase [Vibrio cho... gi\|229512129, gi... - gi\|229512129\|ref\|ZP_04401608.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio c... gi\|227010262, gi... - gi\|227082374\|ref\|YP_002810925.1\| UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase [Vibrio ch... gi\|229355181, gi... - gi\|229507676\|ref\|ZP_04397181.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio c... gi\|229519264, gi... - gi\|229519264\|ref\|ZP_04408707.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio c... gi\|229607180, gi... - gi\|229607180\|ref\|YP_002877828.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio ... LPXD_VIBCH - UDP-3-O-acylglucosamine N-acyltransferase OS=Vibrio cholerae GN=lpxD PE=3 SV=1 gi\|183012861, gi... - gi\|183179450\|ref\|ZP_02957661.1\| UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase [Vibrio cho... gi\|227014146, gi... - gi\|75827539\|ref\|ZP_00756974.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [... gi\|254849380, gi... - gi\|75831251\|ref\|ZP_00760516.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [...	225.0	[0..1]	[338..1]
LPXD_PSEU2 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lpx...	224.0	[0..3]	[339..4]
LPXD_PSEAB - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lpxD PE=3...	223.0	[0..1]	[337..1]
gi\|121729977, gi... - gi\|75814539\|ref\|ZP_00745114.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [...	223.0	[0..1]	[338..1]
gi\|194547545, gi... - gi\|84319626\|ref\|ZP_00968020.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [...	223.0	[0..1]	[337..1]
LPXD_PSEF5 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN...	222.0	[0..3]	[337..4]
gi\|95112172 - gi\|95112172\|emb\|CAK16899.1\| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase [Pseudomonas en... LPXD_PSEE4 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas entomophila (strain L48) GN=lpxD PE=3 SV=1	221.0	[0..3]	[339..4]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVTLKELS LLLDGVVQGD ETLVINSVAT LEHATSGQIS FLANSKYRAQ LESTQASAVL  60
   61 LSAKDAQDYQ GTALVVKDPY VGFARVAQLL DTTPKAAMGI HPSAQIDPSA QLGDGVAIGA 120
  121 NAVIGANVIL GENVQIGAGT VIGQDSIIGS NTRLWANVTL YHNVHLGQDC IIHSGAIIGS 180
  181 DGFGYANERG QWIKIPQTGG VRIGDRVEIG ANSTIDRGAL GHTEIHNGVI IDNQVQVAHN 240
  241 DIIGENTAIA GSTTIAGSVT IGKHCIIGGN CAIAGHLTIA DGVHLSGATN VTGNMREPGL 300
  301 YSSATVAMDN NLWRKNTVRF RQLDELFQRV KAIEKNLNTP E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.09691
Match:	2iu8A
Description:	No description for 2iu8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits