YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347423, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347423, gi|....

Description	E-value	Query Range	Subject Range
gi\|82542774, gi\|... - gi\|82542774\|ref\|YP_406721.1\| CDP-diglyceride synthetase [Shigella boydii Sb227], gi\|81244185\|gb\|ABB6...	183.0	[0..6]	[253..1]
CDSA_SHIFL - Phosphatidate cytidylyltransferase - Shigella flexneri gi\|30039974, gi\|... - gi\|30061732\|ref\|NP_835903.1\| CDP-diglyceride synthetase [Shigella flexneri 2a str. 2457T], gi\|300399... CDSA_ECO57 - Phosphatidate cytidylyltransferase - Escherichia coli O157:H7 gi\|16128168, gi\|... - gb\|AAC73286.1\| CDP-diglyceride synthetase; CDP-diglyceride synthase [Escherichia coli K12], gi\|1612... CDSA_ECOLI - Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-diglyceride synthetase) (CDP-diglyceride pyrop... gi\|15799857, gi\|... - gi\|15799857\|ref\|NP_285869.1\| CDP-diglyceride synthetase [Escherichia coli O157:H7 EDL933], gi\|125129... gi\|56479618, gi\|... - gi\|56479618\|ref\|NP_706120.2\| CDP-diglyceride synthetase [Shigella flexneri 2a str. 301], gi\|56383169... gi\|74310795, gi\|... - gi\|74310795\|ref\|YP_309214.1\| CDP-diglyceride synthetase [Shigella sonnei Ss046], gi\|73854272\|gb\|AAZ8... gi\|15829431, gi\|... - gi\|15829431\|ref\|NP_308204.1\| CDP-diglyceride synthetase [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|251783733, gi... - gi\|251783733\|ref\|YP_002998037.1\| hypothetical protein B21_00172 [Escherichia coli BL21], gi\|24237600...	183.0	[0..6]	[253..1]
gi\|117672744, gi... - gi\|77630031\|ref\|ZP_00792617.1\| COG0575: CDP-diglyceride synthetase [Yersinia pseudotuberculosis IP 3... gi\|89105140 - gi\|89105140\|ref\|ZP_01177665.1\| COG0575: CDP-diglyceride synthetase [Yersinia pestis biovar Orientali... gi\|77633944 - gi\|77633944\|ref\|ZP_00796056.1\| COG0575: CDP-diglyceride synthetase [Yersinia pestis Angola]	182.0	[0..3]	[253..25]
gi\|81239713, gi\|... - gi\|82775565\|ref\|YP_401912.1\| CDP-diglyceride synthetase [Shigella dysenteriae Sd197], gi\|81239713\|gb...	182.0	[0..6]	[253..1]
gi\|186699443, gi... - gi\|186896417\|ref\|YP_001873529.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|51597312, gi\|... - gi\|51597312\|ref\|YP_071503.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 32953], gi\|515... Q667J5\|Q667J5_YERPS - Phosphatidate cytidylyltransferase precursor - Yersinia pseudotuberculosis	182.0	[0..3]	[253..34]
gi\|108806523, gi... - gi\|108806523\|ref\|YP_650439.1\| CDP-diglyceride synthase [Yersinia pestis Antiqua], gi\|108778436\|gb\|AB... gi\|22127005, gi\|... - gi\|22127005\|ref\|NP_670428.1\| CDP-diglyceride synthase [Yersinia pestis KIM], gi\|21960051\|gb\|AAM86679... gi\|25288701 - pir\|\|AI0128 phosphatidate cytidylyltransferase (EC 2.7.7.41) [imported] - Yersinia pestis (strain CO... gi\|115346829, gi... - gi\|218928218\|ref\|YP_002346093.1\| CDP-diglyceride synthase [Yersinia pestis CO92], gi\|16121350\|ref\|NP... gi\|152961537, gi... - gi\|153950042\|ref\|YP_001400003.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 31758], gi... gi\|45442568, gi\|... - gi\|45442568\|ref\|NP_994107.1\| CDP-diglyceride synthase [Yersinia pestis biovar Microtus str. 91001], ... gi\|108776758, gi... - gi\|229903553\|ref\|ZP_04518666.1\| CDP-diglyceride synthase [Yersinia pestis Nepal516], gi\|229679323\|gb... gi\|149290563, gi... - gi\|149366949\|ref\|ZP_01888982.1\| phosphatidate cytidylyltransferase [Yersinia pestis CA88-4125], gi\|1... gi\|169749855, gi... - gi\|170023321\|ref\|YP_001719826.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|167470425 - gi\|167470425\|ref\|ZP_02335129.1\| phosphatidate cytidylyltransferase [Yersinia pestis FV-1] gi\|166011927, gi... - gi\|166011927\|ref\|ZP_02232825.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s... gi\|165912260, gi... - gi\|165939857\|ref\|ZP_02228397.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|165920971, gi... - gi\|165927075\|ref\|ZP_02222907.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|229837757, gi... - gi\|229837757\|ref\|ZP_04457917.1\| CDP-diglyceride synthase [Yersinia pestis Pestoides A], gi\|229704134... gi\|162421094, gi... - gi\|162421094\|ref\|YP_001607766.1\| CDP-diglyceride synthase [Yersinia pestis Angola], gi\|162353909\|gb\|... gi\|167055822, gi... - gi\|167425422\|ref\|ZP_02317175.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Mediaeval... gi\|229689956, gi... - gi\|229843080\|ref\|ZP_04463230.1\| CDP-diglyceride synthase [Yersinia pestis biovar Orientalis str. Ind... gi\|167419870, gi... - gi\|167419870\|ref\|ZP_02311623.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|229697345, gi... - gi\|229840979\|ref\|ZP_04461138.1\| CDP-diglyceride synthase [Yersinia pestis biovar Orientalis str. PEX... gi\|167050665, gi... - gi\|167399957\|ref\|ZP_02305475.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s... gi\|166211247, gi... - gi\|166211247\|ref\|ZP_02237282.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s...	181.0	[0..3]	[253..34]
gi\|77972716, gi\|... - gi\|77972716\|ref\|ZP_00828275.1\| COG0575: CDP-diglyceride synthetase [Yersinia frederiksenii ATCC 3364...	179.0	[0..3]	[253..25]
gi\|127513558, gi... - gi\|78367727\|ref\|ZP_00837990.1\| Phosphatidate cytidylyltransferase [Shewanella sp. PV-4], gi\|78360173...	178.0	[0..1]	[254..8]
gi\|77977742 - gi\|77977742\|ref\|ZP_00833183.1\| COG0575: CDP-diglyceride synthetase [Yersinia intermedia ATCC 29909]	178.0	[0..3]	[253..25]
gi\|78508229, gi\|... - gi\|78692367\|ref\|ZP_00856906.1\| phosphatidate cytidylyltransferase [Shewanella sp. MR-7], gi\|78508229...	177.0	[0..1]	[254..32]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAVFLIAAK EWGRIIDSQC NVTQWSFTCT VGILLIALNL IVPADTIWLR GQIHPIYFAV  60
   61 VTIGALWWMV SLLLVLTYPK SAKLWQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [87-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNPMLKSMFG QLTLVPCFVA LIALKSISSQ ISPYYGASLV LLVMLIVWAA DSGAYFVGKA  60
   61 VGKTKLMPAV SPAKTLEGLL GGLVTTLIVV AGVMVISPEQ ELGLVVAVTL FVALISALGD 120
  121 LSESMFKRAA CIKDSGTILP GHGGVLDRID SLTAALPVFT LIYIAFWM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits