YRC Public Data Repository - Protein Structure Prediction

Protein:	UPPS_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPPS_SHEON.

Description	E-value	Query Range	Subject Range
UPPS_THETN - Undecaprenyl pyrophosphate synthase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1 gi\|223488732, gi... - gi\|254479462\|ref\|ZP_05092789.1\| undecaprenyl pyrophosphate synthetase 1 [Carboxydibrachium pacificum... ISPT_CALS4 - Isoprenyl transferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM ...	379.0	[0..22]	[265..4]
gi\|167037632, gi... - gi\|76796454\|ref\|ZP_00778816.1\| Di-trans-poly-cis-decaprenylcistransferase [Thermoanaerobacter ethano... gi\|241903183, gi... - gi\|241903183\|ref\|ZP_04787910.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter brockii subsp....	368.0	[0..25]	[265..9]
gi\|166854533, gi... - gi\|167040293\|ref\|YP_001663278.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X514], gi... gi\|242258359, gi... - gi\|242258359\|ref\|ZP_04803172.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X513], gi\|...	366.0	[0..25]	[265..9]
gi\|23128548, gi\|... - gi\|23128548\|ref\|ZP_00110393.1\| COG0020: Undecaprenyl pyrophosphate synthase [Nostoc punctiforme PCC ...	364.0	[0..21]	[265..5]
ISPT1_NOSS1 - Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS1 PE=3 SV=1 gi\|25314096 - pir\|\|AD2180 undecaprenyl pyrophosphate synthetase [imported] - Nostoc sp. (strain PCC 7120)	364.0	[0..21]	[265..5]
gi\|67922228, gi\|... - gi\|67922228\|ref\|ZP_00515742.1\| Di-trans-poly-cis-decaprenylcistransferase [Crocosphaera watsonii WH ...	363.0	[0..21]	[266..36]
ISPT_ANAVT - Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2	362.0	[0..21]	[265..5]
ISPT_THEEB - Isoprenyl transferase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1 UPPS_SYNEL - Undecaprenyl pyrophosphate synthetase OS=Synechococcus elongatus GN=uppS PE=3 SV=1	361.0	[0..18]	[265..4]
gi\|170714048, gi... - gi\|170714048\|gb\|EDT26230.1\| undecaprenyl diphosphate synthase [Clostridium perfringens CPE str. F496... gi\|110676017, gi... - gi\|110801370\|ref\|YP_696383.1\| undecaprenyl diphosphate synthase [Clostridium perfringens ATCC 13124]... gi\|182380984, gi... - gi\|182380984\|gb\|EDT78463.1\| undecaprenyl diphosphate synthase [Clostridium perfringens NCTC 8239], g... ISPT_CLOPE - Isoprenyl transferase OS=Clostridium perfringens (strain 13 / Type A) GN=uppS PE=3 SV=1 gi\|169299227, gi... - gi\|169342721\|ref\|ZP_02863762.1\| undecaprenyl diphosphate synthase [Clostridium perfringens C str. JG... gi\|177907477, gi... - gi\|182627140\|ref\|ZP_02954855.1\| undecaprenyl diphosphate synthase [Clostridium perfringens D str. JG... gi\|110803535, gi... - gi\|110803535\|ref\|YP_698983.1\| undecaprenyl diphosphate synthase [Clostridium perfringens SM101], gi\|... gi\|168208113, gi... - gi\|170660606\|gb\|EDT13289.1\| undecaprenyl diphosphate synthase [Clostridium perfringens E str. JGS198... UPPS_CLOPE - Undecaprenyl pyrophosphate synthase OS=Clostridium perfringens GN=uppS PE=3 SV=1 gi\|170710581, gi... - gi\|170710581\|gb\|EDT22763.1\| undecaprenyl diphosphate synthase [Clostridium perfringens B str. ATCC 3...	360.0	[0..34]	[266..21]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTVEFDPQ SRPTEADAYA QTSLPEVLPE LVKQSLPKHV AIIMDGNGRW AQTQGKPRVM  60
   61 GHKAGVKAVR RAVSAASQLG IQSLTLFAFS SENWRRPDKE VSLLMELFFT VLQREIKLLD 120
  121 KNQVKLNIIG DISRFSARLQ KQIRAAEEKT AGNSGLILNV AANYGGRWDI LQAAQKLAEK 180
  181 VETGEMTSSQ FTEEALSEHL CMQNQSEVDL IIRTGGDYRI SNFVLWQAAY AELVFLDTLW 240
  241 PDFDEQAFHE AIATFANRQR RFGLTGSQID EMRAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.30103
Match:	1jp3A
Description:	Undecaprenyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
prenyltransferase activity	4.27318114514627	bayes_pls_golite062009
di-trans,poly-cis-decaprenylcistransferase activity	3.07573514495519	bayes_pls_golite062009
catalytic activity	0.878978773660153	bayes_pls_golite062009
binding	0.458704366412361	bayes_pls_golite062009
transferase activity	0.273947729320601	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.256467886977999	bayes_pls_golite062009
protein binding	0.11675780767527	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: