YRC Public Data Repository - Protein Structure Prediction

Protein:	GLND_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	861 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLND_SHEON.

Description	E-value	Query Range	Subject Range
GLND_PECAS - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Pectobacterium atrosepticum (strain SCR... GLND_ERWCT - [Protein-PII] uridylyltransferase OS=Erwinia carotovora subsp. atroseptica GN=glnD PE=3 SV=1	679.0	[0..5]	[854..45]
GLND_VIBPA - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Vibrio parahaemolyticus serotype O3:K6 ... GLND_VIBPA - [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus GN=glnD PE=3 SV=1	679.0	[0..7]	[853..19]
GLND_KLEOX - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Klebsiella oxytoca GN=glnD PE=3 SV=1 gi\|541204, gi\|470140 - pir\|\|S43196 [protein-PII] uridylyltransferase (EC 2.7.7.59) - Klebsiella pneumoniae, gi\|470140\|emb\|C...	677.0	[0..5]	[854..31]
GLND_SHIF8 - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Shigella flexneri serotype 5b (strain 8...	677.0	[0..8]	[854..37]
GLND_ECO57 - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Escherichia coli O157:H7 GN=glnD PE=3 S... gi\|217325875, gi... - gi\|217325875\|ref\|ZP_03441959.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. TW14... GLND_ECO5E - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Escherichia coli O157:H7 (strain EC4115... gi\|208807602, gi... - gi\|208807602\|ref\|ZP_03249939.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC42... gi\|195938152 - gi\|195938152\|ref\|ZP_03083534.1\| PII uridylyl-transferase [Escherichia coli O157:H7 str. EC4024] gi\|15799849, gi\|... - gi\|15799849\|ref\|NP_285861.1\| PII uridylyl-transferase [Escherichia coli O157:H7 EDL933], gi\|12512889... gi\|208739221, gi... - gi\|208819098\|ref\|ZP_03259418.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC40... gi\|209745878, gi... - pir\|\|A85501 protein PII-uridylyltransferase [imported] - Escherichia coli (strain O157:H7, substrain... gi\|208814167, gi... - gi\|208814167\|ref\|ZP_03255496.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC40... gi\|189000436, gi... - gi\|189000436\|gb\|EDU69422.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC4076],... gi\|187767697, gi... - gi\|187767697\|gb\|EDU31541.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC4196],... gi\|189375685, gi... - gi\|189375685\|gb\|EDU94101.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC508], ... gi\|168789275, gi... - gi\|189371115\|gb\|EDU89531.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC869], ... gi\|189357031, gi... - gi\|189357031\|gb\|EDU75450.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC4401],... gi\|188014575, gi... - gi\|188014575\|gb\|EDU52697.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC4113],... gi\|168770361, gi... - gi\|189360712\|gb\|EDU79131.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC4486],... gi\|168764327, gi... - gi\|189365647\|gb\|EDU84063.1\| protein-P-II uridylyltransferase [Escherichia coli O157:H7 str. EC4501],... gi\|15829423, gi\|... - gi\|15829423\|ref\|NP_308196.1\| PII uridylyl-transferase [Escherichia coli O157:H7 str. Sakai], gi\|1335... gi\|254791300, gi... - gi\|254791300\|ref\|YP_003076137.1\| uridylyltransferase/uridylyl-removing enzyme [Escherichia coli O157...	677.0	[0..8]	[854..37]
GLND_SHISS - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Shigella sonnei (strain Ss046) GN=glnD ...	677.0	[0..8]	[854..37]
gi\|193067726, gi... - gi\|75238870\|ref\|ZP_00722852.1\| COG2844: UTP:GlnB (protein PII) uridylyltransferase [Escherichia coli...	677.0	[0..8]	[854..37]
gi\|124499765, gi... - gi\|124529609\|ref\|ZP_01700553.1\| UTP-GlnB uridylyltransferase, GlnD [Escherichia coli B], gi\|12449976... gi\|251783726, gi... - gi\|251783726\|ref\|YP_002998030.1\| hypothetical protein B21_00164 [Escherichia coli BL21], gi\|24237599... gi\|83585483, gi\|... - gi\|83585483\|ref\|ZP_00924128.1\| COG2844: UTP:GlnB (protein PII) uridylyltransferase [Escherichia coli... gi\|253972187, gi... - gi\|254160286\|ref\|YP_003043394.1\| PII uridylyl-transferase [Escherichia coli B str. REL606], gi\|25397... gi\|253976396, gi... - gi\|254287089\|ref\|YP_003052837.1\| PII uridylyl-transferase [Escherichia coli BL21(DE3)], gi\|253976396... GLND_ECOLC - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Escherichia coli (strain ATCC 8739 / DS...	677.0	[0..8]	[854..37]
GLND_ECOHS - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Escherichia coli O9:H4 (strain HS) GN=g... gi\|75258844, gi\|... - gi\|75258844\|ref\|ZP_00730234.1\| COG2844: UTP:GlnB (protein PII) uridylyltransferase [Escherichia coli... GLND_ECO8A - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Escherichia coli O8 (strain IAI1) GN=gl... GLND_SHIBS - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Shigella boydii serotype 4 (strain Sb22... GLND_ECO55 - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Escherichia coli (strain 55989 / EAEC) ... gi\|194413644, gi... - gi\|75210490\|ref\|ZP_00710641.1\| COG2844: UTP:GlnB (protein PII) uridylyltransferase [Escherichia coli... gi\|75230472, gi\|... - gi\|75230472\|ref\|ZP_00716953.1\| COG2844: UTP:GlnB (protein PII) uridylyltransferase [Escherichia coli... GLND_ECOSE - Bifunctional uridylyltransferase/uridylyl-removing enzyme OS=Escherichia coli (strain SE11) GN=glnD ...	677.0	[0..8]	[854..37]
gi\|83569749, gi\|... - gi\|83569749\|ref\|ZP_00921199.1\| COG2844: UTP:GlnB (protein PII) uridylyltransferase [Shigella dysente...	676.0	[0..8]	[854..37]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTALLAKQS LIEQNQTLLA RFKAKTPIEE LVTQRCQFVD SLVKQAWQQH GLDQYPIALI  60
   61 AVGGYGRGEL HPHSDVDLLF LFEGELSKAA ETTLSEFIAF LWDANLEIGH SVRTLDDTLR 120
  121 LGRDDITIAT NLLEARLLTG PETLFDQLYD AIRQSDFWTS SNFFIAKRDE QTARHAKASA 180
  181 FDLEPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1v4aA
Description:	Structure of the N-terminal Domain of Escherichia coli Glutamine Synthetase adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring phosphorus-containing groups	2.41308867449214	bayes_pls_golite062009
[glutamate-ammonia-ligase] adenylyltransferase activity	1.82264747359149	bayes_pls_golite062009
transferase activity	1.78252455260241	bayes_pls_golite062009
catalytic activity	1.122769147009	bayes_pls_golite062009
nucleotidyltransferase activity	0.78517703623017	bayes_pls_golite062009
binding	0.712563149474185	bayes_pls_golite062009
nucleic acid binding	0.0435534014305499	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [187-621]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKSCPGGLRD IQTIAWVAMR HFGASRLEEL VEYEFLEPAE LEELLECQHF LWKLRFALHM  60
   61 AVGRDENRLL FDVQRQVAEL MGYEDATQLA VEQMMKRYYR TVRRVMELNE MLLQLFKRAT 120
  121 LGHTKALEIQ AIDDNYQRRG AFIEALSDDL FDSGEEIVRL FVHIAKNSNI KGIYAPTLRS 180
  181 LRRARRAQLQ PLQENPLCRQ AFMEILKHPR GIAALSLMHK HGVLSAYLPA WRNIEGQMQF 240
  241 DLFHAYTVDE HTHRLLLNIE RFSQPEQKEE FPLGSVLINQ LPKKGLLVLG AIFHDIAKGR 300
  301 GGDHSKLGSS DALAFCKLHG LNDHDGRLVA WLVENHLVMS VTAQRRDISD PDVVADFASK 360
  361 VRDAVHLSYL YCLTVADICA TNEKTWNNWK GSLLRDLYFS TQRVLARGKE KPVDIRARVR 420
  421 EYQAKAKKEL LRRGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1ou5A
Description:	tRNA CCA-adding enzyme, C-terminal domains; tRNA CCA-adding enzyme, head domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring phosphorus-containing groups	2.41308867449214	bayes_pls_golite062009
[glutamate-ammonia-ligase] adenylyltransferase activity	1.82264747359149	bayes_pls_golite062009
transferase activity	1.78252455260241	bayes_pls_golite062009
catalytic activity	1.122769147009	bayes_pls_golite062009
nucleotidyltransferase activity	0.78517703623017	bayes_pls_golite062009
binding	0.712563149474185	bayes_pls_golite062009
nucleic acid binding	0.0435534014305499	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [622-861]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEKDLDTLWQ RFKADYFLRH QPNQVAWHAE AILKHKQVDE PLVLVSKHTT RGGTELFVYC  60
   61 QDRPKLFATV MAVLDNKNIN VHDANIMTSK DNYALDTFVI LEQDGEPVSQ LSRIQSIRKA 120
  121 LEKALASDNP KLPRFRKLSR KMKPFNVPTQ VSFLESNRHG TSMMELIALD TPGLLAKVGD 180
  181 IFYRCNTTLL SAKITTIGER AEDFFILQTN DGLQLNETQE HTLKEALISA LSAINTESTN 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.02
Match:	2nyiA
Description:	No description for 2nyiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: