YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373173, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373173, gi|....

Description	E-value	Query Range	Subject Range
gi\|113885683, gi... - gi\|82497034\|ref\|ZP_00882595.1\| 4'-phosphopantetheinyl transferase family protein [Shewanella sp. MR-...	204.0	[0..1]	[314..1]
gi\|78689647, gi\|... - gi\|78689647\|ref\|ZP_00854306.1\| 4'-phosphopantetheinyl transferase family protein [Shewanella sp. MR-...	203.0	[0..1]	[317..1]
gi\|78687337, gi\|... - gi\|78687337\|ref\|ZP_00852088.1\| 4'-phosphopantetheinyl transferase family protein [Shewanella sp. ANA...	200.0	[0..1]	[314..1]
ADPPT_MOUSE - L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Mus musculus GN=Aasdhpp...	184.0	[0..6]	[267..19]
gi\|20147157, gi\|... - gi\|22330990\|ref\|NP_187754.2\| 4'-phosphopantetheinyl transferase family protein [Arabidopsis thaliana...	181.0	[0..1]	[263..29]
gi\|82408245, gi\|... - gi\|82408245\|pdb\|2C43\|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopanteth...	180.0	[0..6]	[267..29]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIELFFIPL AEMDAEMVSR CMALLSEDER AKVARYLAPK AQMNGLLVRA ALRCVLSQGL  60
   61 QSPNESSLNA FSSNTGSLPI APQDWCFEYG AKGKPSLCHE QFLKTGIEFN LSHSGDWLLI 120
  121 ALAQGRAHTK FIDQSAKTRL GLGVDIERAR ASTNIYPILN HYFSARETEA LLALPGETAH 180
  181 RQRFFDLWAL KESYIKATGL GLAQSLKSFA FELMPDALVE VHPNQVALRH EWVELKRREP 240
  241 FALPSQLKLY CEIKPTAAFL PDSAHPPPEN LHVQSYFGRL DEEYRFGLSL IHPNALSNVQ 300
  301 ISMTLASIKS LLAASLAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	2bydA
Description:	Structure of aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits