YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373150, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	737 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373150, gi|....

Description	E-value	Query Range	Subject Range
gi\|17230080, gi\|... - gi\|17230080\|ref\|NP_486628.1\| ferrichrome-iron receptor [Nostoc sp. PCC 7120], gi\|17131681\|dbj\|BAB742... gi\|25318826 - pir\|\|AE2129 ferrichrome-iron receptor [imported] - Nostoc sp. (strain PCC 7120)	340.0	[0..14]	[737..160]
gi\|187477707, gi... - gi\|187477707\|ref\|YP_785731.1\| TonB-dependent siderophore receptor [Bordetella avium 197N], gi\|115422...	323.0	[0..21]	[737..120]
gi\|78505765, gi\|... - gi\|78686447\|ref\|ZP_00851214.1\| TonB-dependent haem/haemoglobin receptor [Shewanella sp. ANA-3], gi\|7...	322.0	[0..1]	[737..1]
gi\|49613431, gi\|... - gi\|50122905\|ref\|YP_052072.1\| ferrioxamine B receptor [Pectobacterium atrosepticum SCRI1043], gi\|4961...	322.0	[0..9]	[737..2]
gi\|62178975, gi\|... - gi\|62178975\|ref\|YP_215392.1\| ferrioxamine receptor [Salmonella enterica subsp. enterica serovar Chol...	320.0	[0..1]	[737..1]
FOXA_SALTY - Ferrioxamine B receptor OS=Salmonella typhimurium GN=foxA PE=3 SV=1 FOXA_SALTY - Ferrioxamine B receptor OS=Salmonella typhimurium GN=foxA PE=3 SV=3 FOXA_SALTY - Ferrioxamine B receptor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=foxA PE=3...	316.0	[0..1]	[737..1]
gi\|94412451 - gi\|94412451\|ref\|ZP_01292372.1\| hypothetical protein PaerP_01005750 [Pseudomonas aeruginosa PA7]	315.0	[0..22]	[737..139]
gi\|91715857, gi\|... - gi\|91793855\|ref\|YP_563506.1\| TonB-dependent haem/haemoglobin receptor [Shewanella denitrificans OS21...	312.0	[0..3]	[737..8]
gi\|120559685, gi... - gi\|82740466\|ref\|ZP_00903206.1\| TonB-dependent haem/haemoglobin receptor [Shewanella sp. W3-18-1], gi...	311.0	[0..1]	[737..1]

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Predicted Domain #1

Region A:
Residues: [1-737]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYQPKIGIS KTMIGCLGLC ALPALPLNAK EVLGAPKVEP IEILTVHGQQ YRRATTMTKP  60
   61 GEAIISMAEI EEMQATTFAE VIDDMAGAHI DGGTRSGGER INVWGFGETE DFNVYVDNAP 120
  121 VGFEQYRYGS FFLDPDLIKR VEVIKGAHDV RSGNGGFGGA MYVVTKSADD FLKYDQSVGA 180
  181 RVKASYASNN DAQSYTGTVY GRANQQLSGL LHFTRRDAQD VTLANGEAFE YSGYEQNNYL 240
  241 GKVDYEQGDH QLMLSVTHYL DEGRKPWANR RGPMPAISDF NIRKYGSYEQ ALYATTAYNT 300
  301 YEDNTWSANY RYSPSNPLID TQIVVSHSAN ARHWIRPPIA WEKMTVSVGN FGHESWLDYK 360
  361 RDYIDINNLS VVGAHEITAG LQFRSLDRTS LVFNKSYEKN PEKNFGWYTP YYQPEGRQDT 420
  421 YAAYLRDAIS LTDDLTITPS LRYDFVYSVG KPNIAPDYND IAAGHDYSST HHSGFSPRLG 480
  481 VDYQLTPNTR VNFDYAYSLQ APVVDEIYAV QYAKASITAT SRDIEVERLH AFKLGLINQQ 540
  541 TDLFADQDAL STQITVYANL GRDDIAQRRG AKSDPNQAIQ SGYTNLDGYE IYGADLESQY 600
  601 RYQDFFSDLA VSWLQGEHRG SLKDSLGEDE YLANIAPLDI QLRVGMYITD SISVAWQGTW 660
  661 YDAQDNVPEG DIFNAESPSE NYFLQNIYLA YEPLDSLKGL SIRLMAKNLT NQQVTPFLSD 720
  721 GIPAPGRDVR LSLAYEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.154902
Match:	1by3A
Description:	Ferric hydroxamate uptake receptor FhuA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	2.60507547654721	bayes_pls_golite062009
heme transporter activity	2.15516892820591	bayes_pls_golite062009
cofactor transporter activity	1.63125627644933	bayes_pls_golite062009
substrate-specific transporter activity	0.86109425700917	bayes_pls_golite062009
transmembrane transporter activity	0.424956094980482	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: