YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373111, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373111, gi|....

Description	E-value	Query Range	Subject Range
gi\|98660247, gi\|... - gi\|98660247\|dbj\|GAA02422.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476788...	444.0	[0..3]	[335..2]
gi\|82400648, gi\|... - gi\|82501358\|ref\|ZP_00886702.1\| isocitrate dehydrogenase [Caldicellulosiruptor saccharolyticus DSM 89...	443.0	[0..3]	[335..2]
gi\|83572756, gi\|... - gi\|83589842\|ref\|YP_429851.1\| isocitrate dehydrogenase (NADP) [Moorella thermoacetica ATCC 39073], gi...	433.0	[0..1]	[335..1]
gi\|78042663, gi\|... - gi\|78042663\|ref\|YP_359953.1\| putative isocitrate dehydrogenase, NAD-dependent [Carboxydothermus hydr...	432.0	[0..1]	[335..1]
gi\|116129520, gi... - gi\|118782336\|ref\|XP_312198.3\| ENSANGP00000010852 [Anopheles gambiae str. PEST], gi\|116129520\|gb\|EAA0...	430.0	[0..3]	[335..25]
gi\|25283825 - pir\|\|A97020 isocitrate dehydrogenase [imported] - Clostridium acetobutylicum gi\|15894259, gi\|... - gi\|15894259\|ref\|NP_347608.1\| isocitrate dehydrogenase [Clostridium acetobutylicum ATCC 824], gi\|1502...	429.0	[0..1]	[335..1]
gi\|108884328, gi... - gi\|157134805\|ref\|XP_001656451.1\| isocitrate dehydrogenase [Aedes aegypti], gi\|108884328\|gb\|EAT48553....	428.0	[0..4]	[335..66]
gi\|50752793 - gi\|50752793\|ref\|XP_413748.1\| PREDICTED: similar to isocitrate dehydrogenase 3 (NAD+) alpha [Gallus g...	425.0	[0..4]	[335..143]
gi\|125983432, gi... - gi\|54643797\|gb\|EAL32540.1\| GA11495-PA [Drosophila pseudoobscura], gi\|125983432\|ref\|XP_001355481.1\| G...	425.0	[0..3]	[335..16]

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Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLAALEKQGE LLPQRTLELI  60
   61 EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVL SFKGTQARYE NIDIITVREN 120
  121 TEGMYSGHGQ KVSEDGSTAE ATSIVTRQGA EQIATFAYEL ARKESRKKVT IVHKANIMKS 180
  181 TSGLFLKVAR EVSLRYPDIK TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL 240
  241 VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKAAPI 300
  301 RKAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1x0lA
Description:	Crystal structure of tetrameric homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits