YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373100, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373100, gi|....

Description	E-value	Query Range	Subject Range
gi\|20386366 - gi\|20386366\|gb\|AAM21638.1\|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus incanus subsp. cr...	317.0	[0..2]	[292..73]
gi\|58201026 - gi\|58201026\|gb\|AAW66658.1\| geranyl diphosphate synthase [Picrorhiza kurrooa]	316.0	[0..2]	[291..80]
gi\|46241274 - gi\|46241274\|gb\|AAS82860.1\| geranyl diphosphate synthase large subunit [Antirrhinum majus]	313.0	[0..2]	[291..81]
gi\|56122554 - gi\|56122554\|gb\|AAV74395.1\| geranylgeranyl diphosphate synthase [Adonis aestivalis var. palaestina]	313.0	[0..2]	[292..73]
gi\|92868507, gi\|... - gi\|92871726\|gb\|ABE80654.1\| Polyprenyl synthetase [Medicago truncatula], gi\|92868507\|gb\|ABE78512.1\| P...	310.0	[0..2]	[292..81]
gi\|9971808 - gi\|9971808\|gb\|AAG10424.1\| GGDP synthase [Tagetes erecta]	309.0	[0..2]	[292..71]
gi\|6277254 - gi\|6277254\|dbj\|BAA86284.1\| geranylgeranyl pyrophosphate synthase [Croton sublyratus]	309.0	[0..2]	[292..77]
GGPPS_HEVBR - Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1	307.0	[0..2]	[292..79]
GGPP1_ARATH - Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis th...	306.0	[0..2]	[292..76]
GGPPS_CATRO - Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1	306.0	[0..2]	[291..66]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVNAIKEYQ LRVDDQLKQR FSTLEDTAPQ LKAAMTHGAL LGGKRIRPFL VYSVGQMFGV  60
   61 PLEKLDACAA AIECIHAYSL IHDDLPAMDD DALRRGQPTV HIAFDEATAI LAGDALQTLA 120
  121 FEIVTEAVPG ITSEQHIAMV RALAKASGYR GMCGGQAIDL ASTDKHIDLK ALTQLHNMKT 180
  181 GALISCAVEL ALIAANAPKD QYQTMMEFAH AVGLAFQVQD DILDIIATTE ELGKPQGSDA 240
  241 ESNKSTFPQL LGLQGAKDTA TQLIQEALSA LAKLPYNSQL IADFARYIIE RRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.154902
Match:	2forA
Description:	Crystal Structure of the Shigella flexneri Farnesyl Pyrophosphate Synthase Complex with an Isopentenyl Pyrophosphate
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits