YRC Public Data Repository - Protein Structure Prediction

Protein:	DXS_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	622 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DXS_SHEON.

Description	E-value	Query Range	Subject Range
DXS_PHOLL - 1-deoxy-D-xylulose-5-phosphate synthase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 151... DXS_PHOLL - 1-deoxy-D-xylulose-5-phosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=dxs PE=3 SV=...	524.0	[0..1]	[620..1]
DXS_POLSJ - 1-deoxy-D-xylulose-5-phosphate synthase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=dxs PE=3...	524.0	[0..7]	[618..1]
DXS_SHEDO - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / ...	520.0	[0..1]	[621..1]
DXS_PECAS - 1-deoxy-D-xylulose-5-phosphate synthase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-... DXS_ERWCT - 1-deoxy-D-xylulose-5-phosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=dxs PE=3 SV=1	520.0	[0..1]	[620..1]
gi\|84360384 - gi\|84360384\|ref\|ZP_00985088.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Burkholderia dolosa AUO1...	520.0	[0..7]	[618..1]
DXS_NITMU - 1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849...	520.0	[0..7]	[618..1]
gi\|67549342, gi\|... - gi\|67549342\|ref\|ZP_00427208.1\| Deoxyxylulose-5-phosphate synthase [Burkholderia vietnamiensis G4], g...	520.0	[0..6]	[618..12]
DXS_SHEFN - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxs PE=3 S...	519.0	[0..1]	[621..1]
DXS_ECOLC - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) G... gi\|124500206, gi... - gi\|124528869\|ref\|ZP_01700054.1\| deoxyxylulose-5-phosphate synthase [Escherichia coli B], gi\|12450020... DXS_ECOSE - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain SE11) GN=dxs PE=3 SV=1 DXS_ECO8A - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O8 (strain IAI1) GN=dxs PE=3 SV=1 gi\|75512481, gi\|... - gi\|75512481\|ref\|ZP_00735020.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli 53638],... gi\|75230145, gi\|... - gi\|75230145\|ref\|ZP_00716649.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli B7A], g... DXS_ECOHS - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O9:H4 (strain HS) GN=dxs PE=3 SV=1 DXS_ECO24 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dxs ...	519.0	[0..1]	[621..1]
DXS_ECOUT - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=dxs PE=3 SV=1 gi\|237707586, gi... - gi\|237707586\|ref\|ZP_04538067.1\| 1-deoxyxylulose-5-phosphate synthase [Escherichia sp. 3_2_53FAA], gi... DXS_SHIB3 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ... DXS_ECO45 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dxs PE=3 ... gi\|75209976, gi\|... - gi\|75209976\|ref\|ZP_00710165.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli B171], ... gi\|83585661, gi\|... - gi\|83585661\|ref\|ZP_00924303.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli 101-1],... DXS_ECOK1 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O1:K1 / APEC GN=dxs PE=3 SV=1 DXS_SHIBS - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=dxs PE=3 SV=... gi\|75237198, gi\|... - gi\|75237198\|ref\|ZP_00721245.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli E110019... gi\|192927208, gi... - gi\|75256792\|ref\|ZP_00728397.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli E22], g...	519.0	[0..1]	[621..1]

Back

Predicted Domain #1

Region A:
Residues: [1-622]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDISQFPV LAQANTPNEL RQLPQALLPQ LADELREFLL KSVGMSSGHF ASGLGTVELT  60
   61 VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDRMHTIRQ KNGLHPFPWR EESEYDTFSV 120
  121 GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLMVLND 180
  181 NEMSISENVG ALNNHLAQLM SGRFYTTIRE SSKKVLKGMP VIKEMAKRTE EHLKGMVVPG 240
  241 TLFEELGFNY IGPIDGHDVD ALVETLRNMR NLKGPQVLHI MTKKGRGYEP AEKDPIGWHA 300
  301 VPKFDPSLFK KPATKPGLPT FSQVFGKWLC DIAEQDEKVL GITPAMREGS GMVEFSQRFP 360
  361 KQYFDAAIAE QHAVTLGAGF ACEGYKPVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR 420
  421 GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYDAG PSAVRYPRGS 480
  481 ATGATQVEAM TALPIGKGVI KRLGKRIALL NFGTTLAAAL TAAESLDATV VDMRFVKPLD 540
  541 VDLVKEMAQT HDVLVTVEEN AIMGGAGSGV LELLQQLKMP KPVLQIGLPD EFIKHGSPDE 600
  601 VIHDLQLDAE GMLAQINAYL AN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	148.0
Match:	2o1sA
Description:	No description for 2o1sA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits