YRC Public Data Repository - Protein Structure Prediction

Protein:	GRPE_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRPE_SHEON.

Description	E-value	Query Range	Subject Range
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	194.0	[0..30]	[195..42]
gi\|124545181, gi... - gi\|124545181\|ref\|ZP_01704408.1\| GrpE protein [Shewanella putrefaciens 200], gi\|124511368\|gb\|EAY55433... gi\|82721431, gi\|... - gi\|82741247\|ref\|ZP_00903973.1\| heat shock protein GrpE [Shewanella sp. W3-18-1], gi\|82721431\|gb\|EAP5...	193.0	[0..1]	[206..37]
gi\|113948426, gi... - gi\|113948426\|ref\|ZP_01434086.1\| GrpE protein [Shewanella baltica OS195], gi\|113909311\|gb\|EAU27956.1\|...	192.0	[0..1]	[206..37]
gi\|77810813, gi\|... - gi\|77814311\|ref\|ZP_00813574.1\| GrpE protein [Shewanella putrefaciens CN-32], gi\|77810813\|gb\|EAO95190...	191.0	[0..1]	[206..33]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	191.0	[0..1]	[205..1]
gi\|68521534, gi\|... - gi\|68540906\|ref\|ZP_00580655.1\| GrpE protein [Shewanella baltica OS155], gi\|68521534\|gb\|EAN45027.1\| G...	190.0	[0..1]	[206..33]
GRPE_RHIME - Protein GrpE OS=Rhizobium meliloti (strain 1021) GN=grpE PE=3 SV=1 GRPE_RHIME - Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV=1	187.0	[0..1]	[206..1]
GRPE_SHESA - Protein GrpE OS=Shewanella sp. (strain ANA-3) GN=grpE PE=3 SV=1	186.0	[0..1]	[206..1]
gi\|17983809, gi\|... - gi\|17988060\|ref\|NP_540694.1\| heat shock protein GrpE [Brucella melitensis 16M], gi\|17983809\|gb\|AAL52... gi\|25311554 - pir\|\|AC3474 grpE protein [imported] - Brucella melitensis (strain 16M)	186.0	[0..40]	[206..2]
GRPE_CHESB - Protein GrpE OS=Chelativorans sp. (strain BNC1) GN=grpE PE=3 SV=1	185.0	[0..5]	[205..8]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNESIKAEQ DLIHEGVESE VSTEEASLID ELTQANFRIE ELEQLLADAL AKVDEQKDSV  60
   61 IRAAAEVDNI RRRAAMDVEK ANKFALEKFA NELLPVLDNM ERALQGTNPQ DETTKAIYEG 120
  121 VELTQKSLLT AVAKFGVKQI DPQGQAFNPD QHQAIGMQPS AEFPTNTVML VMQKGYELNS 180
  181 RLLRPAMVMV SQGGPSQESA SIDIEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits