YRC Public Data Repository - Protein Structure Prediction

Protein:	GLGC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	420 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLGC_SHEON.

Description	E-value	Query Range	Subject Range
GLGC_SHESA - Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain ANA-3) GN=glgC PE=3 SV=1	325.0	[0..1]	[420..1]
GLGC_SHESR - Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=glgC PE=3 SV=1 GLGC_SHESM - Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=glgC PE=3 SV=1	324.0	[0..1]	[420..1]
GLGC_SHEB5 - Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=glgC...	322.0	[0..1]	[420..1]
GLGC_SHESW - Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain W3-18-1) GN=glgC PE=3 SV=1 GLGC_SHEPC - Glucose-1-phosphate adenylyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=...	320.0	[0..1]	[420..1]
GLGC_SHEB9 - Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS195) GN=glgC PE=3 SV=1	319.0	[0..1]	[420..1]
gi\|127512103, gi... - gi\|78365723\|ref\|ZP_00836008.1\| Nucleotidyl transferase [Shewanella sp. PV-4], gi\|78362259\|gb\|EAP0407...	314.0	[0..2]	[420..6]
GLGC_METFK - Glucose-1-phosphate adenylyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM...	312.0	[0..2]	[413..7]
GLGC_SHEFN - Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 ...	309.0	[0..1]	[420..1]
GLGC_SHEAM - Glucose-1-phosphate adenylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=g...	308.0	[0..3]	[420..5]
GLGC_NITMU - Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849...	306.0	[0..2]	[413..5]

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Predicted Domain #1

Region A:
Residues: [1-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVRYISNL TRETYALILA GGRGSRLHEL TDWRAKPALY FGGKFRIIDF PLSNCINSGI  60
   61 RRVGVVTQYK SHSLIRHVMR GWGHFKKELG ESVEILPASQ RYSENWYQGT ADAVFQNIDI 120
  121 IRHELPKYVM VLSGDHVYRM DYAGLLAAHA ESGADMTVSC LEVPVAEAAG AFGVMEVDDD 180
  181 MRILGFEEKP QLPKHCPGNP EKCLASMGNY VFNTEFLFEQ LKKDAQNAES DRDFGKDIIP 240
  241 SIIEKHKVFA YPFKSAFPNE QAYWRDVGTL DSFWLANMEL LSPTPALNLY DAKWPIWTYQ 300
  301 EQLPPAKFVF DDDDRRGMAV DSIISGGCII SGATVRRSVL FNEVRVCSYS VVEDSVVLPD 360
  361 VVVLRHCKIK NAIIDRGCII PEGTVIGYNH DHDRAKGFRV SEKGITLVTR DMLGLPVGYE 420
  421

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1yp2A
Description:	Crystal structure of potato tuber ADP-glucose pyrophosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.59855937987599	bayes_pls_golite062009
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	2.31513836185329	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.04393180556087	bayes_pls_golite062009
O-acyltransferase activity	1.75961983651531	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.51711005399931	bayes_pls_golite062009
cytidylyltransferase activity	1.46439247968206	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009
glucose-1-phosphate adenylyltransferase activity	1.1107654322416	bayes_pls_golite062009
acyltransferase activity	1.1088759555825	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.10852250644129	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.886009567107207	bayes_pls_golite062009
3-deoxy-manno-octulosonate cytidylyltransferase activity	0.83115346830439	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
uridylyltransferase activity	0.54930147038803	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.48277064848483	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.38929738612511	bayes_pls_golite062009
glucose-1-phosphate thymidylyltransferase activity	0.204810937394121	bayes_pls_golite062009
guanylyltransferase activity	0.14847697203788	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.10541627748542	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: