YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373070, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	837 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373070, gi|....

Description	E-value	Query Range	Subject Range
gi\|22298324, gi\|... - gi\|22298324\|ref\|NP_681571.1\| glycogen phosphorylase [Thermosynechococcus elongatus BP-1], gi\|2229450...	1211.0	[0..13]	[837..14]
gi\|114681358 - gi\|114681358\|ref\|XP_525293.2\| PREDICTED: brain glycogen phosphorylase [Pan troglodytes]	1208.0	[0..14]	[837..170]
gi\|109105561 - gi\|109105561\|ref\|XP_001114805.1\| PREDICTED: glycogen phosphorylase isoform 2 [Macaca mulatta] gi\|164612476 - gi\|164612476\|gb\|ABY63637.1\| phosphorylase, glycogen. muscle (predicted) [Papio anubis]	1202.0	[0..14]	[837..6]
gi\|50054411, gi\|... - gi\|50054411\|ref\|NP_001001904.1\| brain glycogen phosphorylase [Xenopus (Silurana) tropicalis], gi\|463...	1201.0	[0..14]	[837..6]
gi\|147898991, gi... - gi\|47940264\|gb\|AAH72163.1\| MGC80198 protein [Xenopus laevis], gi\|147898991\|ref\|NP_001085064.1\| hypot...	1200.0	[0..14]	[837..6]
PYGM - phosphorylase, glycogen, muscle	1199.0	[0..14]	[837..6]

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Predicted Domain #1

Region A:
Residues: [1-837]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHDSELSPN TSGVTPKKRA TIAVESLKAV AHDPCEPCDA LPASFTRHVR YGLSRGEGAR  60
   61 GELFQALALS VKEQMLDDWR ETRIKDSHYD NKQVAYLSLE FLMGRTLGNA LLSLDLEQDS 120
  121 REALSHYSVS LEELEEAEHD AGLGNGGLGR LAACFLDSCA SLDLSVTGYG IRYEYGMFAQ 180
  181 KIVDGYQVER PDRWLREGNP WEVRVPHHNV TVHFFGHTES YVDKQGRRHV IWVDTQDVLA 240
  241 VAYDMPVPGY RNGRINTLRL WKAEATDDFD LAEFNQGDYT EAVARKNLAE QITMVLYPND 300
  301 ASENGKELRL RQQYFLSSAS LQAILKRWVH HHGHDFTQFA AKNVMQLNDT HPSIAVPELM 360
  361 RLLVDEYALE WDAAWAITRQ TMAYTNHTLL PEALERWPVR MMALMLPRIL EIIYEINARY 420
  421 LDLVAHHWPG DADKLASMSI IQEGPDPHVR MAYLAIVASF SVNGVAGLHT QLLKSGLFKD 480
  481 FYSLWPQKFN NRTNGVTPRR WLAHCNPALA KLLSSHLGQS WVTDLSQLMA LNALTQDASF 540
  541 IQQWREVKQG NKVLLANMIA KECGVEFDPS MLFDVQVKRI HEYKRQLLNI LHVIHLYHQI 600
  601 QQGHTEHLVP RCVLIGGKAA PGYFMAKLII KLASNVAHMV NSDPVVAPYL RFAFLPNYNV 660
  661 SAMEKICPGT DVSEQISTAG KEASGTGNMK FMMNGALTIG TLDGANIEML EEVGEESFFL 720
  721 FGLNAEQVAA MRSNYQPKRI IAQSHALSEV MALLKSGHFN LLEPGIFDPI ITSIESSDDQ 780
  781 WMTAADFDSY RLAQEAVANT YKDQQKWTQM SIRNTAASGR FSSDVTIAGY RDEIWKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1z8dA
Description:	No description for 1z8dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits