YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373057, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373057, gi|....

Description	E-value	Query Range	Subject Range
MASY_GOSHI - Malate synthase, glyoxysomal OS=Gossypium hirsutum PE=2 SV=1	694.0	[0..9]	[548..11]
MASY_SOYBN - Malate synthase, glyoxysomal (Fragment) OS=Glycine max PE=2 SV=1	693.0	[0..18]	[548..17]
MASY_RICCO - Malate synthase, glyoxysomal OS=Ricinus communis PE=2 SV=1	689.0	[0..9]	[548..10]
MASY_ARATH - Malate synthase OS=Arabidopsis thaliana GN=MLS PE=1 SV=1	685.0	[0..11]	[549..8]
gi\|22507303\|gb\|A... - malate synthase [Musa acuminata] gi\|22507303 - gi\|22507303\|gb\|AAK07428.2\|AF321286_1 malate synthase [Musa acuminata AAA Group]	677.0	[0..18]	[549..9]
MASY_BRANA - Malate synthase, glyoxysomal OS=Brassica napus PE=2 SV=1	674.0	[0..11]	[549..8]
MASY_CUCSA - Malate synthase, glyoxysomal OS=Cucumis sativus PE=2 SV=2	672.0	[0..18]	[548..21]
gi\|8886863 - gi\|8886863\|gb\|AAF80589.1\|AF223418_1 malate synthase [Asparagus officinalis]	670.0	[0..18]	[548..8]
gi\|113889778, gi... - gi\|78689543\|ref\|ZP_00854204.1\| Malate synthase A [Shewanella sp. MR-7], gi\|78511119\|gb\|EAP24480.1\| M...	661.0	[0..1]	[549..1]

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Predicted Domain #1

Region A:
Residues: [1-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEHTLSEQQ VNLTLNKATA NGTLALVGNT IPGQEVIFTE GAMALLESLC REFGAEVPTL  60
   61 LAKRKDRQAR IDKGALPDFL PETRAIRDGA WKIRGIPNDL LDRRVEITGP VERKMVINAL 120
  121 NANAKVFMAD FEDSLAPSWQ KVVEGQINLR DAVRGEIEYT APETGKHYKL GPNPAVLICR 180
  181 VRGLHLKEKH VEFNQQSIPG GLFDFAMYFY HNYRQLLAKG SGPYFYIPKL ESHIEARWWA 240
  241 KVFAFVEERF CLQAGTIKCT CLIETLPAVF EMDEILYELR SNIVALNCGR WDYIFSYIKT 300
  301 LKRHGDRVLP DRQAVTMDTP FLSAYSRLLI KTCHKRGALA MGGMAAFIPA KDPAQNEAVL 360
  361 QRVRKDKELE ARNGHDGTWV AHPGLADTAM GIFNEYIGQD HQNQLHITRD VDAPILAAEL 420
  421 LKTCDGERTE QGMRLNIRIA LQYLEAWISG NGCVPIYGLM EDAATAEISR ASIWQWIQHG 480
  481 KSLSNGKLVT KQLFKDMLVE ELANVKKEVG SDRFTHGKFT QAAVLLEDIT TSDELVDFLT 540
  541 LPGYEMLTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.0
Match:	2gq3A
Description:	No description for 2gq3A was found.

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	4.27762948199878	bayes_pls_golite062009
transferase activity, transferring acyl groups	2.61158006337608	bayes_pls_golite062009
catalytic activity	1.23634637968745	bayes_pls_golite062009
transferase activity	0.263512092168681	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: