YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372995, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	601 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372995, gi|....

Description	E-value	Query Range	Subject Range
gi\|68186676, gi\|... - gi\|91772668\|ref\|YP_565360.1\| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...	248.0	[0..181]	[586..47]
gi\|19915870, gi\|... - gi\|20090805\|ref\|NP_616880.1\| sensory transduction histidine kinase [Methanosarcina acetivorans C2A],...	243.0	[0..137]	[589..21]
gi\|73668585, gi\|... - gi\|73668585\|ref\|YP_304600.1\| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusa...	240.0	[0..124]	[587..270]
gi\|78194171, gi\|... - gi\|78222916\|ref\|YP_384663.1\| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15...	239.0	[0..7]	[595..448]
gi\|89154470, gi\|... - gi\|89207576\|ref\|ZP_01186114.1\| PAS [Bacillus weihenstephanensis KBAB4], gi\|89154470\|gb\|EAR74501.1\| P...	239.0	[0..144]	[588..158]
gi\|30022663, gi\|... - gi\|30022663\|ref\|NP_834294.1\| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579], gi\|...	239.0	[0..135]	[588..149]
gi\|21228280, gi\|... - gi\|21228280\|ref\|NP_634202.1\| two component system histidine kinase [Methanosarcina mazei Go1], gi\|20...	238.0	[0..211]	[583..403]
gi\|74490501, gi\|... - gi\|75762015\|ref\|ZP_00741929.1\| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar... gi\|218899741, gi... - gi\|218899741\|ref\|YP_002448152.1\| sensory box histidine kinase PhoR [Bacillus cereus G9842], gi\|21854...	238.0	[0..138]	[588..152]

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Predicted Domain #1

Region A:
Residues: [1-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFFTRLMF ILALFIDFNL PVIAADSHAN DPVRIGIMAF NEPDEVMANW QPTADWLSQQ  60
   61 LHRPVQLMPL TPSQLDEALV KQSIDFLIGN ALTTVAFKRN YGTSHLLTLV HNRVRSPEQS 120
  121 IGSAIVARID SNLSQWDQLK DEKLVSSDPQ AFGGFQIFAA TMATKGINAY RDIPKLRFIG 180
  181 FPQQKLLQMV LSGEADIAVL PSCVLENALD KGLVPANKLK VVLKQPHPDF ACEVSTQLYP 240
  241 GYALTKLGHT DHKLATQVVA SLLQITPDTP AAQQGRYQYW SAPVDDSPVF ELLKQLEQWP 300
  301 FVTNWQRLLH NALPWGTSLI FVLLLGYIHH LRVKRLVVKR TQALSDEITH HQHTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.93
Match:	1suvE
Description:	Structure of Human Transferrin Receptor-Transferrin Complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [356-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KILLEQQQQF YRAQRVLLTG EMASGIAHEL KQPLAGIRYL TQGCLYRLDN TQAELATALN  60
   61 KVISQVDRAQ TTIHRLRTFC QQTSDYQSCD LRTVIEETLT LMQPEFQRLK LSPKVNLQAL 120
  121 PVFADASLMQ QVLVNLLRNA LDAMESIPQK SLFIDTGITG ENVYIHITDA GCGLSDSALK 180
  181 RLFFPFETSK PQGLGLGMVI CKRIIEEHKG KIEAHHANPG LTIKVTLPVN SQPGLGEQND 240
  241 TALPRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits