YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347132, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347132, gi|....

Description	E-value	Query Range	Subject Range
gi\|3257265, gi\|1... - gi\|3257265\|dbj\|BAA29948.1\| 137aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590714\|... gi\|7444996 - gi\|7444996\|pir\|\|B71136 hypothetical protein PH0854 - Pyrococcus horikoshii	198.0	[0..2]	[125..12]
Y854_PYRHO - UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2 Y854_PYRHO - RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	198.0	[0..2]	[125..1]
RIDA_PYRFU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / ...	195.0	[0..2]	[125..1]
Y1251_PYRAB, YC5... - (Q9UZA3) Hypothetical UPF0076 protein PYRAB12510, UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... Y1251_PYRAB - RutC family protein PYRAB12510 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB12510 PE=3 SV=1	192.0	[0..1]	[125..1]
gi\|145952961, gi... - gi\|90573901\|ref\|ZP_01230409.1\| hypothetical protein CdifQ_02002769 [Clostridium difficile QCD-32g58]... gi\|255651025 - gi\|255651025\|ref\|ZP_05397927.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|115251566, gi... - gi\|126700129\|ref\|YP_001089026.1\| putative translation inhibitor endoribonuclease [Clostridium diffic... gi\|255656496 - gi\|255656496\|ref\|ZP_05401905.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255101674 - gi\|255101674\|ref\|ZP_05330651.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255307543 - gi\|255307543\|ref\|ZP_05351714.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255315240 - gi\|255315240\|ref\|ZP_05356823.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255517909 - gi\|255517909\|ref\|ZP_05385585.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|254976108 - gi\|254976108\|ref\|ZP_05272580.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255093498 - gi\|255093498\|ref\|ZP_05322976.1\| putative translation inhibitor endoribonuclease [Clostridium diffici...	184.0	[0..1]	[126..1]
gi\|88947236, gi\|... - gi\|88947236\|ref\|ZP_01150243.1\| YjgF-like protein [Desulfotomaculum reducens MI-1], gi\|88923307\|gb\|EA...	184.0	[0..1]	[127..1]
gi\|167037280, gi... - gi\|76795304\|ref\|ZP_00777677.1\| YjgF-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|241883716, gi... - gi\|241903918\|ref\|ZP_04788633.1\| endoribonuclease L-PSP [Thermoanaerobacter brockii subsp. finnii Ako...	184.0	[0..2]	[125..1]
gi\|186685855, gi... - gi\|23127695\|ref\|ZP_00109558.1\| COG1357: Uncharacterized low-complexity proteins [Nostoc punctiforme ...	183.0	[0..1]	[126..301]
gi\|125975280, gi... - gi\|67874400\|ref\|ZP_00504186.1\| YjgF-like protein [Clostridium thermocellum ATCC 27405], gi\|67851173\|... gi\|196198252, gi... - gi\|196252394\|ref\|ZP_03151053.1\| endoribonuclease L-PSP [Clostridium thermocellum DSM 4150], gi\|19619...	183.0	[0..1]	[124..1]
gi\|77996096, gi\|... - gi\|78043981\|ref\|YP_361254.1\| endoribonuclease L-PSP family protein [Carboxydothermus hydrogenoforman...	182.0	[0..2]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSIIHAER APTAIGPYSH GTRYGNLIFT SGQLPVCKDK GGVVDGGISE QSVQCLENLK  60
   61 YVLEAGGGSL DTVLKTTCYL SEISDFAAFN EVYKTYFKTD CPARSCFAVK DLPLGVKVEI 120
  121 EAIAHVND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.522879
Match:	2dyyA
Description:	No description for 2dyyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits