YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347096, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347096, gi|....

Description	E-value	Query Range	Subject Range
gi\|117921438, gi... - gi\|78685261\|ref\|ZP_00850040.1\| Thermostable carboxypeptidase 1 [Shewanella sp. ANA-3], gi\|78506909\|g...	733.0	[0..1]	[497..5]
gi\|113885838, gi... - gi\|82496130\|ref\|ZP_00881701.1\| Thermostable carboxypeptidase 1 [Shewanella sp. MR-4], gi\|82405934\|gb...	731.0	[0..1]	[496..5]
gi\|126521150, gi... - gi\|153821332\|ref\|ZP_01973999.1\| thermostable carboxypeptidase 1 [Vibrio cholerae B33], gi\|126521150\|... gi\|153817751, gi... - gi\|153817751\|ref\|ZP_01970418.1\| thermostable carboxypeptidase 1 [Vibrio cholerae NCTC 8457], gi\|1265... gi\|227009473, gi... - gi\|227081585\|ref\|YP_002810136.1\| thermostable carboxypeptidase 1 [Vibrio cholerae M66-2], gi\|2270094... gi\|15641425, gi\|... - gi\|9655911\|gb\|AAF94571.1\| thermostable carboxypeptidase 1 [Vibrio cholerae O1 biovar El Tor str. N16... gi\|11280334 - pir\|\|B82202 thermostable carboxypeptidase 1 VC1414 [imported] - Vibrio cholerae (strain N16961 serog... gi\|121591275, gi... - gi\|121591275\|ref\|ZP_01678571.1\| thermostable carboxypeptidase 1 [Vibrio cholerae 2740-80], gi\|121546... gi\|125618329 - gi\|125618329\|gb\|EAZ46870.1\| thermostable carboxypeptidase 1 [Vibrio cholerae MO10] gi\|153221161, gi... - gi\|153221161\|ref\|ZP_01952196.1\| thermostable carboxypeptidase 1 [Vibrio cholerae MAK 757], gi\|124119... gi\|183012807, gi... - gi\|183179396\|ref\|ZP_02957607.1\| thermostable carboxypeptidase 1 [Vibrio cholerae MZO-3], gi\|18301280...	731.0	[0..9]	[496..33]
gi\|114048393, gi... - gi\|78689488\|ref\|ZP_00854149.1\| Thermostable carboxypeptidase 1 [Shewanella sp. MR-7], gi\|78511064\|gb...	730.0	[0..1]	[497..5]
gi\|75816757 - gi\|75816757\|ref\|ZP_00747218.1\| COG2317: Zn-dependent carboxypeptidase [Vibrio cholerae V52] gi\|75826791 - gi\|75826791\|ref\|ZP_00756226.1\| COG2317: Zn-dependent carboxypeptidase [Vibrio cholerae O395]	729.0	[0..9]	[496..3]
gi\|116189685, gi... - gi\|75830809\|ref\|ZP_00760080.1\| COG2317: Zn-dependent carboxypeptidase [Vibrio cholerae MO10], gi\|116...	729.0	[0..9]	[496..3]
gi\|37198521, gi\|... - gi\|37679776\|ref\|NP_934385.1\| Zn-dependent carboxypeptidase [Vibrio vulnificus YJ016], gi\|37198521\|db...	729.0	[0..4]	[496..8]
gi\|116215411, gi... - gi\|75822107\|ref\|ZP_00751804.1\| COG2317: Zn-dependent carboxypeptidase [Vibrio cholerae RC385], gi\|11...	727.0	[0..9]	[496..3]
gi\|75819354, gi\|... - gi\|75819354\|ref\|ZP_00749438.1\| COG2317: Zn-dependent carboxypeptidase [Vibrio cholerae V51], gi\|1162...	727.0	[0..9]	[496..3]
gi\|28806736, gi\|... - gi\|28898518\|ref\|NP_798123.1\| thermostable carboxypeptidase 1 [Vibrio parahaemolyticus RIMD 2210633],... gi\|28806736 - gi\|28806736\|dbj\|BAC60007.1\| thermostable carboxypeptidase 1 [Vibrio parahaemolyticus RIMD 2210633]	722.0	[0..9]	[496..21]

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Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTKEPTPSY DKLTAHFQKI SHFEHFSALG NWDQAAMMPL GGGSERGDAM AELALHIHTL  60
   61 KTAPHLGDNL ALAAQEVLTS EQHANLREMQ YQYRQATLVP GELVQAKTKM AYQCENAWRE 120
  121 QRKNNDWQGF KPNLKAIIAL AREEALIRAQ AQNIFPYDAL LDKFEPGMTT AKLEQTFGNL 180
  181 KTWLPTLIQN VLEKQACEPT LKLNGPFDIK AQQALGRDVM AYLGFDFNHG RLDISSHPFC 240
  241 GGVPSDVRIT TRYNEADFNS AIMGIVHETG HARYEQGLPK QWCGQPAGLA RSMGVHESQS 300
  301 LFCEMQLGAN PAFLRQLQPL IKQHLGCEFS AQDLARHYTR VNPGLIRVDA DEVTYPCHIL 360
  361 LRFEAEKAFI DGSLSVDDLP DFWSSQMQQL LGINTEGNYR DGCMQDIHWA VGELGYFPSY 420
  421 TLGAMYAAQC RFAMERSLGP IENLIDNGQL SQVFDWLGKH IWSKGSLFTT DELIIQASGE 480
  481 PLNSQYLAKH LTQRYLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1wgzA
Description:	Crystal structure of carboxypeptidase 1 from Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits