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View Structure Prediction Details

Protein: gi|24347084, gi|...
Organism: Shewanella oneidensis MR-1
Length: 434 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347084, gi|....

Description E-value Query
Range
Subject
Range
Nhe2-PB, Nhe2-PA - The gene Na<sup>+</sup>/H<sup>+</sup> hydrogen exchanger 2 is referred to in FlyBase by the symbol D...
262.0 [0..5] [432..197]
gi|125987481, gi... - gi|54645835|gb|EAL34573.1| GA21648-PA [Drosophila pseudoobscura], gi|125987481|ref|XP_001357503.1| G...
257.0 [0..5] [432..194]
gi|118791508, gi... - gi|118791508|ref|XP_552951.2| AGAP009036-PA [Anopheles gambiae str. PEST], gi|116117635|gb|EAL39028....
AGAP009036-PA - solute carrier family 9 (sodium/hydrogen exchanger), member 3|protein_coding|3R:24426421:24457340:1|...
257.0 [0..2] [432..245]
gi|32450774 - gi|32450774|gb|AAM63432.1| Na+/H+ exchanger [Aedes aegypti]
257.0 [0..2] [432..249]
gi|66518336 - gi|66518336|ref|XP_391857.2| PREDICTED: similar to Nhe2 CG9256-PA, isoform A [Apis mellifera]
255.0 [0..2] [432..219]
gi|37727744 - gi|37727744|gb|AAO34131.1| alkali metal ion/proton exchanger 3 [Anopheles gambiae]
252.0 [0..2] [432..245]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYQILCIL SALALVTSVA SSRLHKLQET VAITALALGT SLLLLLGGKA LGGNVYGYFV  60
   61 AGLEKLDFQA LLLNGMLGFL LFAGALQIRL KILRHQKWEI LILAFVGTLL STFIVGGLLY 120
  121 YLAPMFGLPL ALSHCLLFGA LISPTDPIAV LAILKKMGAP EDIAIQVEGE SLFNDGIGLV 180
  181 IFVAISHLAF ST

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [193-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPLTFTQISL LFVQEALGGV LYGAVLGLLL HHFFRYCEEE TQLMLVTLLI PTAGYVMAAE  60
   61 LGVSGPLAMV SAGIIIGNYS VPKFFARQER VKLYTFWSLI ESFFNALLFL LLGLLLLLVT 120
  121 FKAPLWWFML LAIPLVLTAR AVSVFLPYMG FRLVKSYNPY AESILIWGGL RGGLALAMAM 180
  181 SLPKGIIIDS QPGVELHELV LVMTYAVVVF SILIQGSSMT GLIRRSNAVV TRPDSHTTQE 240
  241 SR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle