YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372934, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372934, gi|....

Description	E-value	Query Range	Subject Range
gi\|127511995, gi... - gi\|78368887\|ref\|ZP_00839083.1\| Signal recognition particle protein [Shewanella sp. PV-4], gi\|7835906...	476.0	[0..1]	[457..1]
gi\|114564085, gi... - gi\|69950660\|ref\|ZP_00638508.1\| Signal recognition particle protein [Shewanella frigidimarina NCIMB 4...	472.0	[0..1]	[457..1]
gi\|68547556, gi\|... - gi\|68547556\|ref\|ZP_00587090.1\| Signal recognition particle protein [Shewanella amazonensis SB2B], gi...	460.0	[0..1]	[457..1]
gi\|23105148 - ref\|ZP_00091606.1\| COG0541: Signal recognition particle GTPase [Azotobacter vinelandii] gi\|67156469, gi\|... - gi\|67156469\|ref\|ZP_00418062.1\| Signal recognition particle protein [Azotobacter vinelandii AvOP], gi...	460.0	[0..1]	[451..1]
gi\|58375310, gi\|... - gi\|58375310\|ref\|XP_306996.2\| ENSANGP00000016415 [Anopheles gambiae str. PEST], gi\|55246880\|gb\|EAA027...	457.0	[0..1]	[448..2]
gi\|91794106, gi\|... - gi\|91794106\|ref\|YP_563757.1\| signal recognition particle protein [Shewanella denitrificans OS217], g...	456.0	[0..1]	[457..1]
gi\|110806722, gi... - gi\|110806722\|ref\|YP_690242.1\| signal recognition particle protein [Shigella flexneri 5 str. 8401], g...	455.0	[0..1]	[457..1]
gi\|24113948, gi\|... - gi\|24113948\|ref\|NP_708458.1\| signal recognition particle protein [Shigella flexneri 2a str. 301], gi... gi\|30042265, gi\|... - gi\|30064009\|ref\|NP_838180.1\| signal recognition particle protein [Shigella flexneri 2a str. 2457T], ...	454.0	[0..1]	[457..1]
gi\|189367273, gi... - gi\|189367273\|gb\|EDU85689.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC450... gi\|189362137, gi... - gi\|189362137\|gb\|EDU80556.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC448... gi\|187770557, gi... - gi\|187770557\|gb\|EDU34401.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC419... gi\|189003543, gi... - gi\|189003543\|gb\|EDU72529.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC407... gi\|189370881, gi... - gi\|189370881\|gb\|EDU89297.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC869... gi\|168801727, gi... - gi\|189376173\|gb\|EDU94589.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC508... gi\|169754041, gi... - gi\|170019113\|ref\|YP_001724067.1\| signal recognition particle protein [Escherichia coli ATCC 8739], g... gi\|218355412, gi... - gi\|218547871\|ref\|YP_002381662.1\| signal recognition particle protein [Escherichia fergusonii ATCC 35... gi\|218366299, gi... - gi\|218559530\|ref\|YP_002392443.1\| signal recognition particle protein [Escherichia coli S88], gi\|2183... gi\|218690728, gi... - gi\|218690728\|ref\|YP_002398940.1\| signal recognition particle protein [Escherichia coli ED1a], gi\|218... gi\|218696234, gi... - gi\|218696234\|ref\|YP_002403901.1\| signal recognition particle protein [Escherichia coli 55989], gi\|21... gi\|254794556, gi... - gi\|254794556\|ref\|YP_003079393.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|218706111, gi... - gi\|218706111\|ref\|YP_002413630.1\| signal recognition particle protein [Escherichia coli UMN026], gi\|2... gi\|254162580, gi... - gi\|254162580\|ref\|YP_003045688.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|226839310, gi... - gi\|254037686\|ref\|ZP_04871744.1\| signal recognition particle protein [Escherichia sp. 1_1_43], gi\|226... gi\|253323540, gi... - gi\|254289341\|ref\|YP_003055089.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|251785932, gi... - gi\|251785932\|ref\|YP_003000236.1\| hypothetical protein B21_02463 [Escherichia coli BL21], gi\|24237820... gi\|170082214, gi... - gi\|170082214\|ref\|YP_001731534.1\| Signal recognition particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|238901770, gi... - gi\|238901770\|ref\|YP_002927566.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|208806160, gi... - gi\|208806160\|ref\|ZP_03248497.1\| signal recognition particle protein [Escherichia coli O157:H7 str. E... gi\|226899842, gi... - gi\|237706802\|ref\|ZP_04537283.1\| signal recognition particle protein [Escherichia sp. 3_2_53FAA], gi\|... EG10300 - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) / Signal Recognition Particle (SRP) ... gi\|208735091, gi... - gi\|208813814\|ref\|ZP_03255143.1\| signal recognition particle protein [Escherichia coli O157:H7 str. E... gi\|227888176, gi... - gi\|227888176\|ref\|ZP_04005981.1\| signal recognition particle protein [Escherichia coli 83972], gi\|227... gi\|208819384, gi... - gi\|208819384\|ref\|ZP_03259704.1\| signal recognition particle protein [Escherichia coli O157:H7 str. E... gi\|209398002, gi... - gi\|209398002\|ref\|YP_002272081.1\| signal recognition particle protein [Escherichia coli O157:H7 str. ... gi\|209913344, gi... - gi\|209920085\|ref\|YP_002294169.1\| signal recognition particle protein [Escherichia coli SE11], gi\|209... gi\|215266032, gi... - gi\|215487960\|ref\|YP_002330391.1\| signal recognition particle protein [Escherichia coli O127:H6 str. ... gi\|217327115, gi... - gi\|217327115\|ref\|ZP_03443198.1\| signal recognition particle protein [Escherichia coli O157:H7 str. T... SRP54_ECOLI, SR5... - Signal recognition particle protein (Fifty-four homolog) (p48) - Escherichia coli, (P07019) Signal r... SRP54_ECOL6 - Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1 gi\|115513956, gi... - gi\|117624832\|ref\|YP_853745.1\| signal recognition particle protein [Escherichia coli APEC O1], gi\|115... gi\|124500901, gi... - gi\|124528009\|ref\|ZP_01699362.1\| signal recognition particle protein [Escherichia coli B], gi\|1245009... gi\|91211944, gi\|... - gi\|91211944\|ref\|YP_541930.1\| signal recognition particle protein [Escherichia coli UTI89], gi\|910735... gi\|15832727, gi\|... - gi\|15832727\|ref\|NP_311500.1\| signal recognition particle protein [Escherichia coli O157:H7 str. Saka... gi\|110344363, gi... - gi\|110642771\|ref\|YP_670501.1\| signal recognition particle protein [Escherichia coli 536], gi\|1103443... gi\|191169064, gi... - gi\|75227659\|ref\|ZP_00714400.1\| COG0541: Signal recognition particle GTPase [Escherichia coli B7A], g... gi\|75258029, gi\|... - gi\|75258029\|ref\|ZP_00729503.1\| COG0541: Signal recognition particle GTPase [Escherichia coli E22], g... gi\|75196624, gi\|... - gi\|75196624\|ref\|ZP_00706694.1\| COG0541: Signal recognition particle GTPase [Escherichia coli HS], gi... gi\|75208556, gi\|... - gi\|75208556\|ref\|ZP_00708869.1\| COG0541: Signal recognition particle GTPase [Escherichia coli B171], ... gi\|82545154, gi\|... - gi\|82545154\|ref\|YP_409101.1\| signal recognition particle protein [Shigella boydii Sb227], gi\|8124656... gi\|85675481, gi\|... - gi\|89109411\|ref\|AP_003191.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escher... gi\|188489634, gi... - gi\|75513216\|ref\|ZP_00735658.1\| COG0541: Signal recognition particle GTPase [Escherichia coli 53638],... gi\|73856677, gi\|... - gi\|74313200\|ref\|YP_311619.1\| signal recognition particle protein [Shigella sonnei Ss046], gi\|7385667... SRP54_ECOL6 - Signal recognition particle protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) G... EG10300 - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) / Signal Recognition Particle (SRP) ... SRP54_ECO57 - Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1 gi\|187730941, gi... - gi\|75178222\|ref\|ZP_00698281.1\| COG0541: Signal recognition particle GTPase [Shigella boydii BS512], ... gi\|12517035, gi\|... - gi\|15803132\|ref\|NP_289163.1\| signal recognition particle protein [Escherichia coli O157:H7 EDL933], ... gi\|157081263, gi... - gi\|75187357\|ref\|ZP_00700624.1\| COG0541: Signal recognition particle GTPase [Escherichia coli E24377A... gi\|83585222, gi\|... - gi\|83585222\|ref\|ZP_00923871.1\| COG0541: Signal recognition particle GTPase [Escherichia coli 101-1],...	454.0	[0..1]	[457..1]
gi\|7769071 - gi\|7769071\|gb\|AAF69242.1\|AF173880_5 signal recognition particle protein-like protein [Acidithiobacil... gi\|218665204, gi... - gi\|218665204\|ref\|YP_002427226.1\| signal recognition particle protein [Acidithiobacillus ferrooxidans... gi\|198284558, gi... - gi\|198284558\|ref\|YP_002220879.1\| signal recognition particle protein [Acidithiobacillus ferrooxidans...	453.0	[0..1]	[454..1]

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Predicted Domain #1

Region A:
Residues: [1-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFENLTDRLS RTLKNISGRG RLTEENVKET LREVRMALLE ADVALPVVRE FVNNVKERAV  60
   61 GQEVAKSLSP GQAFIKIVQS ELEKSMGEAN QALDLATQPP AVVMMAGLQG AGKTTSVAKL 120
  121 GKLLRTRHKK SVLVVSADVY RPAAIKQLET LATEVDVEFF PSDVSQKPID IAKAAIAHAK 180
  181 LKFIDVVILD TAGRLHVDEA MMDEIKALHA ALKPIETLFV VDAMTGQDAA NTAKAFNEAL 240
  241 PLTGVILTKV DGDARGGAAL SIRHITGKPI KFLGVGEKTD ALEPFHPDRI ASRILGMGDV 300
  301 LSLIEEVERG VDKEKAMKLA SKVKQGGSFD LEDFREQLQQ MKNMGGMMSM IEKLPGVGQL 360
  361 PPDALAQIQD GKMTRQMEAI INSMTAKERK NPDLIKGSRK RRIAAGSGTE IQDVNRLLKQ 420
  421 FTQMQKMMKK MSAKGGMQKM MRGMRGMMPG GMKFPGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	127.0
Match:	2j289
Description:	No description for 2j289 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits