YRC Public Data Repository - Protein Structure Prediction

Protein:	ACPS_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACPS_SHEON.

Description	E-value	Query Range	Subject Range
ACPS_VIBPA - Holo-[acyl-carrier-protein] synthase OS=Vibrio parahaemolyticus GN=acpS PE=3 SV=1 gi\|153839831, gi... - gi\|153839831\|ref\|ZP_01992498.1\| holo-(acyl-carrier-protein) synthase [Vibrio parahaemolyticus AQ3810... ACPS_VIBPA - Holo-[acyl-carrier-protein] synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)...	159.0	[0..1]	[126..1]
gi\|121628741, gi... - gi\|75815088\|ref\|ZP_00745615.1\| COG0736: Phosphopantetheinyl transferase (holo-ACP synthase) [Vibrio ... ACPS_VIBC3 - Holo-[acyl-carrier-protein] synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical O...	158.0	[0..2]	[127..1]
ACPS_GEODF - Holo-[acyl-carrier-protein] synthase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) G...	158.0	[0..2]	[126..1]
ACPS_VIBCH - Holo-[acyl-carrier-protein] synthase OS=Vibrio cholerae GN=acpS PE=1 SV=1 ACPS_VIBCM - Holo-[acyl-carrier-protein] synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=acpS PE=3 SV=1 gi\|229507483, gi... - gi\|229507483\|ref\|ZP_04396988.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae BX 330286], gi... gi\|229512322, gi... - gi\|229512322\|ref\|ZP_04401801.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae B33], gi\|22935... gi\|229514083, gi... - gi\|229514083\|ref\|ZP_04403545.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae TMA 21], gi\|22... gi\|229344147, gi... - gi\|229519458\|ref\|ZP_04408901.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae RC9], gi\|22934... gi\|229606988, gi... - gi\|229606988\|ref\|YP_002877636.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae MJ-1236], gi\|... gi\|153830870, gi... - gi\|153830870\|ref\|ZP_01983537.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae 623-39], gi\|14... gi\|149739263, gi... - gi\|153826900\|ref\|ZP_01979567.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae MZO-2], gi\|149... gi\|121590990, gi... - gi\|121590990\|ref\|ZP_01678309.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae 2740-80], gi\|1... gi\|153214508, gi... - gi\|153214508\|ref\|ZP_01949417.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae 1587], gi\|1241... gi\|153222469, gi... - gi\|153222469\|ref\|ZP_01953203.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae MAK 757], gi\|1... ACPS_VIBCH - Holo-[acyl-carrier-protein] synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inab... gi\|153819823, gi... - gi\|153819823\|ref\|ZP_01972490.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae NCTC 8457], gi... gi\|254845287, gi... - gi\|75829318\|ref\|ZP_00758625.1\| COG0736: Phosphopantetheinyl transferase (holo-ACP synthase) [Vibrio ... gi\|225355074, gi... - gi\|75818653\|ref\|ZP_00748789.1\| COG0736: Phosphopantetheinyl transferase (holo-ACP synthase) [Vibrio ...	156.0	[0..2]	[127..1]
ACPS_VIBVU - Holo-[acyl-carrier-protein] synthase OS=Vibrio vulnificus GN=acpS PE=3 SV=1 ACPS_VIBVU - Holo-[acyl-carrier-protein] synthase OS=Vibrio vulnificus (strain CMCP6) GN=acpS PE=3 SV=1	154.0	[0..1]	[126..1]
ACPS_VIBF1 - Holo-[acyl-carrier-protein] synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=acpS PE=3 SV...	154.0	[0..1]	[126..1]
gi\|91227848, gi\|... - gi\|91227848\|ref\|ZP_01262021.1\| 4'-phosphopantetheinyl transferase [Vibrio alginolyticus 12G01], gi\|9...	154.0	[0..1]	[126..1]
ACPS_VIBVY - Holo-[acyl-carrier-protein] synthase OS=Vibrio vulnificus (strain YJ016) GN=acpS PE=3 SV=1	153.0	[0..1]	[126..1]
gi\|116183577, gi... - gi\|75854066\|ref\|ZP_00761786.1\| COG0736: Phosphopantetheinyl transferase (holo-ACP synthase) [Vibrio ...	153.0	[0..1]	[126..1]
gi\|84376762, gi\|... - gi\|84390108\|ref\|ZP_00991370.1\| 4'-phosphopantetheinyl transferase [Vibrio splendidus 12B01], gi\|8437...	152.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVGLGTDI VEIERISAHV ARSGDKLAKR VLTEAEFEIY QQHSQPSRYL AKRFAAKEAA  60
   61 AKALGTGIGR GVSFQHIHIG NTPDGAPTID FTEGAQQRLT LLNGVVGHIS IADEKSYAIA 120
  121 TVILESR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1f7tA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
holo-[acyl-carrier-protein] synthase activity	3.16041523883346	bayes_pls_golite062009
phosphotransferase activity, for other substituted phosphate groups	3.07692326713136	bayes_pls_golite062009
catalytic activity	1.85383781679828	bayes_pls_golite062009
transferase activity	0.733560176609492	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.571740867528267	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: