YRC Public Data Repository - Protein Structure Prediction

Protein:	NHAA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	389 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHAA_SHEON.

Description	E-value	Query Range	Subject Range
NHAA_SHEB5 - Na(+)/H(+) antiporter NhaA OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=nhaA PE=3 SV=1	474.0	[0..1]	[389..1]
NHAA_SHEB9 - Na(+)/H(+) antiporter NhaA OS=Shewanella baltica (strain OS195) GN=nhaA PE=3 SV=1	473.0	[0..1]	[389..1]
NHAA_SHESW - Na(+)/H(+) antiporter NhaA OS=Shewanella sp. (strain W3-18-1) GN=nhaA PE=3 SV=1	472.0	[0..1]	[389..1]
NHAA_SHEPC - Na(+)/H(+) antiporter NhaA OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=nhaA PE=3 SV=...	470.0	[0..1]	[389..1]
gi\|238725034, gi... - gi\|77976155\|ref\|ZP_00831688.1\| COG3004: Na+/H+ antiporter [Yersinia frederiksenii ATCC 33641], gi\|23...	467.0	[0..1]	[388..1]
NHAA_SHEAM - Na(+)/H(+) antiporter NhaA OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=nhaA PE=3 SV=1	467.0	[0..1]	[388..1]
NHAA_SHESA - Na(+)/H(+) antiporter NhaA OS=Shewanella sp. (strain ANA-3) GN=nhaA PE=3 SV=1	466.0	[0..1]	[389..1]
NHAA_SHEFN - Na(+)/H(+) antiporter NhaA OS=Shewanella frigidimarina (strain NCIMB 400) GN=nhaA PE=3 SV=1	465.0	[0..1]	[388..1]
NHAA_ECOL5 - Na(+)/H(+) antiporter NhaA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nhaA PE=3 SV=1 gi\|190905097, gi... - gi\|191174625\|ref\|ZP_03036112.1\| sodium/proton antiporter nhaA [Escherichia coli F11], gi\|190905097\|g... gi\|215263254, gi... - gi\|215485182\|ref\|YP_002327613.1\| pH-dependent sodium/proton antiporter [Escherichia coli O127:H6 str...	464.0	[0..3]	[385..2]
NHAA_ECOL6 - Na(+)/H(+) antiporter nhaA OS=Escherichia coli O6 GN=nhaA PE=3 SV=1 NHAA_ECOL6 - Na(+)/H(+) antiporter NhaA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nhaA PE... NHAA_ECOK1 - Na(+)/H(+) antiporter NhaA OS=Escherichia coli O1:K1 / APEC GN=nhaA PE=3 SV=1 gi\|218556958, gi... - gi\|218556958\|ref\|YP_002389871.1\| pH-dependent sodium/proton antiporter [Escherichia coli S88], gi\|21... NHAA_ECOUT - Na(+)/H(+) antiporter NhaA OS=Escherichia coli (strain UTI89 / UPEC) GN=nhaA PE=3 SV=1 gi\|237704160, gi... - gi\|237704160\|ref\|ZP_04534641.1\| pH-dependent sodium/proton antiporter [Escherichia sp. 3_2_53FAA], g...	464.0	[0..3]	[385..2]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAIRNFLS QESAGGILLL IAVAFAMLMA NSPLAGFYQG FLGTEVQVRV GALDLHKPLL  60
   61 LWINDGLMAL FFLLIGLEVK RELLEGALSS VAQASLPTFA AIGGMLVPAG IYLLFNYGDP 120
  121 ITQAGWAIPA ATDIAFALGI MALLGSRVPV ALKVFLLALA IIDDLGVIVI IALFYSSDLS 180
  181 TVSLIIASIA IVGLVALNRK GVTSLAPYGV LGLILWVAVL KSGVHATLAG VIIAFCIPLR 240
  241 AKDGSSPSEH LEHSLHPWST FLILPVFAFA NAGVALGNMS LDTLMSPVPV GIALGLMLGK 300
  301 PIGVMLFSFV AVKLKLAQLP DGIGWKQIAP VAAMCGIGFT MSMFIASLAF EQADPMFGDL 360
  361 ARLGTLMGSI FAALIGYFWL SKVLPKKGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	126.0
Match:	1zcdA
Description:	Crystal structure of the Na+/H+ antiporter NhaA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits