YRC Public Data Repository - Protein Structure Prediction

Protein:	LGT_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LGT_SHEON.

Description	E-value	Query Range	Subject Range
gi\|67547059, gi\|... - gi\|67547059\|ref\|ZP_00424966.1\| Prolipoprotein diacylglyceryl transferase [Burkholderia vietnamiensis...	301.0	[0..1]	[268..157]
LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221... LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus GN=lgt PE=3 SV=1	300.0	[0..2]	[267..5]
gi\|116183388, gi... - gi\|75853859\|ref\|ZP_00761609.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio sp. Ex25], ... gi\|91188458, gi\|... - gi\|91227679\|ref\|ZP_01261956.1\| prolipoprotein diacylglyceryl transferase [Vibrio alginolyticus 12G01...	298.0	[0..2]	[267..5]
LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus GN=lgt PE=3 SV=2 LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain CMCP6) GN=lgt PE=3 SV=2	297.0	[0..2]	[267..5]
LGT_VIBVY - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain YJ016) GN=lgt PE=3 SV=1	296.0	[0..2]	[267..5]
gi\|84375415, gi\|... - gi\|84393971\|ref\|ZP_00992711.1\| prolipoprotein diacylglyceryl transferase [Vibrio splendidus 12B01], ... gi\|86147415, gi\|... - gi\|86147415\|ref\|ZP_01065728.1\| prolipoprotein diacylglyceryl transferase [Vibrio sp. MED222], gi\|858...	296.0	[0..3]	[267..6]
LGT_VIBF1 - Prolipoprotein diacylglyceryl transferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=lgt PE=...	295.0	[0..2]	[267..5]
gi\|121546811, gi... - gi\|121591330\|ref\|ZP_01678619.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 2740-80],... gi\|229530479, gi... - gi\|229530479\|ref\|ZP_04419867.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 12129(1)]... gi\|124114027, gi... - gi\|153216962\|ref\|ZP_01950726.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 1587], gi... gi\|229608725, gi... - gi\|229608725\|ref\|YP_002879373.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MJ-1236]... gi\|153803568, gi... - gi\|153803568\|ref\|ZP_01958154.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MZO-3], g... gi\|153820131, gi... - gi\|153820131\|ref\|ZP_01972798.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae NCTC 8457... gi\|229354244, gi... - gi\|229508720\|ref\|ZP_04398213.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae B33], gi\|... LGT_VIBCH - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor... gi\|116187791, gi... - gi\|75828824\|ref\|ZP_00758161.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae MO... LGT_VIBC3 - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classi... gi\|121730085, gi... - gi\|75814358\|ref\|ZP_00744958.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae V5... LGT_VIBCH - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae GN=lgt PE=3 SV=1 gi\|197750775, gi... - gi\|254291914\|ref\|ZP_04962696.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae AM-19226]... LGT_VIBCM - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lgt PE=3 ... gi\|148875364, gi... - gi\|153829175\|ref\|ZP_01981842.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 623-39], ... gi\|229505706, gi... - gi\|229505706\|ref\|ZP_04395216.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae BX 330286... gi\|153826522, gi... - gi\|153826522\|ref\|ZP_01979189.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MZO-2], g... gi\|229350183, gi... - gi\|229512934\|ref\|ZP_04402401.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae TMA 21], ... gi\|229519530, gi... - gi\|229519530\|ref\|ZP_04408973.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae RC9], gi\|... gi\|229342197, gi... - gi\|229520964\|ref\|ZP_04410386.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae TM 11079-...	291.0	[0..2]	[267..5]
gi\|46102542 - gi\|46102542\|gb\|AAS80322.1\| putative prolipoprotein diacylglyceryl transferase [Xenorhabdus nematophi...	291.0	[0..2]	[266..5]
gi\|68518046, gi\|... - gi\|68544243\|ref\|ZP_00583906.1\| Prolipoprotein diacylglyceryl transferase [Shewanella baltica OS155],...	291.0	[0..1]	[268..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNFPNIDP VIVKFGPFDI FGQTFEPALR WYGFTYLVGF VAAMWLLNRQ ADRSNGLWSR  60
   61 EQVSDLLFYG FLGVILGGRI GYVLFYHFDY FLASPMYLFK ISEGGMSFHG GLIGVITAMI 120
  121 YITWKQKRTF FAVADMVAPV VPIGLGAGRI GNFINGELWG RVTDVPWAMV FP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [173-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGGPEPRHPS QLYQFALEGV ALFLLLYWFS KRTKKVGAVS GMFLLGYGIF RVIVETVRQP  60
   61 DAQLGLYWGL MTMGQILSVP MILFGLYLIL RPEGKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits