YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372899, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372899, gi|....

Description	E-value	Query Range	Subject Range
gi\|77381874, gi\|... - gi\|77457871\|ref\|YP_347376.1\| cobalamin biosynthesis protein [Pseudomonas fluorescens Pf0-1], gi\|7738...	325.0	[0..34]	[321..18]
gi\|28202879, gi\|... - gi\|28210442\|ref\|NP_781386.1\| cobalamin biosynthesis protein [Clostridium tetani E88], gi\|28202879\|gb...	323.0	[0..7]	[315..5]
gi\|28868917, gi\|... - gi\|28868917\|ref\|NP_791536.1\| cobalamin biosynthesis protein [Pseudomonas syringae pv. tomato str. DC... tr\|Q885X0\|Q885X0... - Cobalamin biosynthesis protein CobD OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=cobD PE=3 ...	323.0	[0..18]	[321..1]
gi\|63257614, gi\|... - gi\|66046907\|ref\|YP_236748.1\| cobalamin biosynthesis protein [Pseudomonas syringae pv. syringae B728a...	321.0	[0..18]	[321..1]
gi\|71556125, gi\|... - gi\|71735572\|ref\|YP_275841.1\| cobalamin biosynthesis protein [Pseudomonas syringae pv. phaseolicola 1...	321.0	[0..18]	[321..1]
gi\|95109557, gi\|... - gi\|95109557\|emb\|CAK14258.1\| putative cobalamin biosynthesis protein CobD [Pseudomonas entomophila L4... gi\|95109557 - gi\|95109557\|emb\|CAK14258.1\| putative cobalamin biosynthesis protein CobD [Pseudomonas entomophila L4...	320.0	[0..18]	[321..1]
gi\|68346073, gi\|... - gi\|70731774\|ref\|YP_261516.1\| cobalamin biosynthesis protein [Pseudomonas fluorescens Pf-5], gi\|68346...	318.0	[0..18]	[321..1]
gi\|26988407, gi\|... - gi\|26988407\|ref\|NP_743832.1\| cobalamin biosynthesis protein [Pseudomonas putida KT2440], gi\|24983163...	314.0	[0..18]	[321..6]
COBD_CLOTE - Cobalamin biosynthesis protein CobD OS=Clostridium tetani (strain Massachusetts / E88) GN=cobD PE=3 ... COBD_CLOTE - Cobalamin biosynthesis protein CobD OS=Clostridium tetani GN=cobD PE=3 SV=2	313.0	[0..18]	[315..1]
gi\|82738627, gi\|... - gi\|82738627\|ref\|ZP_00901455.1\| Cobalamin biosynthesis protein CbiB [Pseudomonas putida F1], gi\|82714...	312.0	[0..18]	[321..1]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSSFYQQLV EIDGALFEGF LVLFFALLLA RLAPLPREMQ PLIWFSHLAK QLAAKVNRPG  60
   61 RAPSQQATAG FLAMLLLVFP FWAIITFLLE LAAFPWFFEF LVLYLCLSDA GFSQVADEIA 120
  121 KALNREDNAS AKKLLQPWVV RDTDNLSEVG LTKATIEKLA TAPIYGTAST IFFFAIAGAP 180
  181 MVLAVRMIKQ LELS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [195-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WPPIQPKYQY FCRTVHTLST ALLAIPAWLW SLSIAIQGGP KALALLFRTS KNHPALRGYV  60
   61 MSVSLVANIL RIELGGPQKF SGQRIDVAKV VYGPQPHHEM IAPAIKLTSR ACAIWFSFIT 120
  121 LLPFIWAGLR WLQTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits