YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372852, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372852, gi|....

Description	E-value	Query Range	Subject Range
gi\|78365650, gi\|... - gi\|78365650\|ref\|ZP_00835935.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella...	381.0	[0..1]	[378..1]
gi\|114048490, gi... - gi\|78692043\|ref\|ZP_00856620.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella... gi\|117921534, gi... - gi\|78686609\|ref\|ZP_00851374.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella... gi\|82497921, gi\|... - gi\|82497921\|ref\|ZP_00883443.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella...	381.0	[0..1]	[378..1]
gi\|119775773, gi... - gi\|68548097\|ref\|ZP_00587615.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella...	380.0	[0..1]	[378..1]
gi\|124546969, gi... - gi\|124546969\|ref\|ZP_01705974.1\| spermidine/putrescine ABC transporter ATPase subunit [Shewanella put... gi\|120559959, gi... - gi\|82740777\|ref\|ZP_00903512.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella... gi\|77816293, gi\|... - gi\|77816293\|ref\|ZP_00815491.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella...	380.0	[0..1]	[378..1]
gi\|114564171, gi... - gi\|69950574\|ref\|ZP_00638422.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella...	377.0	[0..1]	[378..1]
gi\|151364319, gi... - gi\|152999701\|ref\|YP_001365382.1\| spermidine/putrescine ABC transporter ATPase subunit [Shewanella ba... gi\|217974348, gi... - gi\|217974348\|ref\|YP_002359099.1\| spermidine/putrescine ABC transporter ATPase subunit [Shewanella ba... gi\|113951594, gi... - gi\|160874319\|ref\|YP_001553635.1\| spermidine/putrescine ABC transporter ATPase subunit [Shewanella ba... gi\|125996555, gi... - gi\|68543931\|ref\|ZP_00583615.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella...	376.0	[0..1]	[378..1]
gi\|91716382, gi\|... - gi\|91794380\|ref\|YP_564031.1\| spermidine/putrescine ABC transporter ATP-binding subunit [Shewanella d...	373.0	[0..2]	[378..11]
gi\|67665844, gi\|... - gi\|67665844\|ref\|ZP_00463102.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Burkholder... gi\|105894118, gi... - gi\|67658289\|ref\|ZP_00455662.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Burkholder...	370.0	[0..2]	[376..8]
gi\|68347508, gi\|... - gi\|70733209\|ref\|YP_262982.1\| putrescine ABC transporter, ATP-binding protein [Pseudomonas fluorescen...	368.0	[0..15]	[378..17]
gi\|77385627, gi\|... - gi\|77461624\|ref\|YP_351131.1\| spermidine/putrescine ABC transporter ATP-binding subunit [Pseudomonas ...	368.0	[0..15]	[378..17]

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Predicted Domain #1

Region A:
Residues: [1-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSGVTNK PTTKTQEKVL LKIERVSKLF DDVRAVDDVS LTINKGEIFA LLGGSGSGKS  60
   61 TLLRMLAGFE RPTSGRIYLD GEDITDLPPY ERPINMMFQS YALFPHMTVA QNIAFGLKQD 120
  121 KLPKAEIEQR VQEMLKLVHM EQYGKRKPHQ LSGGQRQRVA LARSLAKRPK LLLLDEPMGA 180
  181 LDKKLRTQMQ LEVVEILERV GVTCVMVTHD QEEAMTMAGR ISIMSDGWIA QTGSPMDIYE 240
  241 SPNSRMIAEF IGSVNLFSGE IEVDEVDHLI IKPNDLARSF YVGYGVTTSL EDKRVWLAVR 300
  301 PEKTIISREQ PEGEYNWAKG IVHDIAYLGG ISVYYIRLEN GQIVQCSMTN RERRADHATW 360
  361 DDEVFISWED TSGVVLRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.522879
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits