YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346959, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346959, gi|....

Description	E-value	Query Range	Subject Range
gi\|114705308, gi... - gi\|114705308\|ref\|ZP_01438216.1\| putrescine-binding periplasmic protein [Fulvimarina pelagi HTCC2506]...	295.0	[0..1]	[367..1]
gi\|94414865, gi\|... - gi\|94414865\|ref\|ZP_01294719.1\| hypothetical protein PaerP_01003445 [Pseudomonas aeruginosa PA7], gi\|...	294.0	[0..1]	[367..2]
gi\|218769263, gi... - gi\|218889040\|ref\|YP_002437904.1\| polyamine transport protein [Pseudomonas aeruginosa LESB58], gi\|218... gi\|254237467, gi... - gi\|84318520\|ref\|ZP_00966943.1\| COG0687: Spermidine/putrescine-binding periplasmic protein [Pseudomon... gi\|84324380, gi\|... - gi\|84324380\|ref\|ZP_00972438.1\| COG0687: Spermidine/putrescine-binding periplasmic protein [Pseudomon... gi\|107099281 - gi\|107099281\|ref\|ZP_01363199.1\| hypothetical protein PaerPA_01000293 [Pseudomonas aeruginosa PACS2] gi\|11350806 - pir\|\|E83607 polyamine transport protein PA0300 [imported] - Pseudomonas aeruginosa (strain PAO1) SPUD_PSEAB - Putrescine-binding periplasmic protein SpuD OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=spuD PE... SPUD_PSEAE - Putrescine-binding periplasmic protein SpuD OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C...	294.0	[0..1]	[367..2]
gi\|254694281 - gi\|254694281\|ref\|ZP_05156109.1\| hypothetical protein Babob3T_06384 [Brucella abortus bv. 3 str. Tuly... gi\|225641449, gi... - gi\|225853084\|ref\|YP_002733317.1\| hypothetical protein BMEA_A1665 [Brucella melitensis ATCC 23457], g... gi\|148370872, gi... - gi\|148559615\|ref\|YP_001259475.1\| putative spermidine/putrescine ABC transporter, periplasmic spermid... gi\|254710643 - gi\|254710643\|ref\|ZP_05172454.1\| hypothetical protein BpinB_10306 [Brucella pinnipedialis B2/94] gi\|254708270 - gi\|254708270\|ref\|ZP_05170098.1\| hypothetical protein BpinM_15261 [Brucella pinnipedialis M163/99/10] gi\|254702329 - gi\|254702329\|ref\|ZP_05164157.1\| hypothetical protein Bsuib55_15918 [Brucella suis bv. 5 str. 513] gi\|17986694, gi\|... - gi\|17986694\|ref\|NP_539328.1\| putrescine-binding periplasmic protein [Brucella melitensis 16M], gi\|17... gi\|163674583, gi... - gi\|163843860\|ref\|YP_001628264.1\| hypothetical protein BSUIS_A1668 [Brucella suis ATCC 23445], gi\|163... gi\|25358052 - pir\|\|AE3303 putrescine-binding periplasmic protein BMEI0411 [imported] - Brucella melitensis (strain...	287.0	[0..2]	[367..4]
gi\|254697934 - gi\|254697934\|ref\|ZP_05159762.1\| solute-binding family 1 protein [Brucella abortus bv. 2 str. 86/8/59... gi\|254730825 - gi\|254730825\|ref\|ZP_05189403.1\| solute-binding family 1 protein [Brucella abortus bv. 4 str. 292] gi\|82700414 - gi\|82700414\|ref\|YP_414988.1\| solute-binding family 1 protein [Brucella melitensis biovar Abortus 230... gi\|82616515 - gi\|82616515\|emb\|CAJ11584.1\| Bacterial periplasmic spermidine/putrescine-binding protein:Bacterial ex... gi\|62290491, gi\|... - gi\|62290491\|ref\|YP_222284.1\| spermidine/putrescine ABC transporter periplasmic spermidine/putrescine...	286.0	[0..2]	[367..4]
gi\|161619552, gi... - gi\|161619552\|ref\|YP_001593439.1\| hypothetical protein BCAN_A1649 [Brucella canis ATCC 23365], gi\|161... gi\|254704858 - gi\|254704858\|ref\|ZP_05166686.1\| hypothetical protein Bsuib36_13253 [Brucella suis bv. 3 str. 686] gi\|23348468, gi\|... - gi\|23502475\|ref\|NP_698602.1\| spermidine/putrescine ABC transporter, periplasmic spermidine/putrescin...	284.0	[0..2]	[367..4]
gi\|77385628, gi\|... - gi\|77461625\|ref\|YP_351132.1\| extracellular solute-binding protein [Pseudomonas fluorescens Pf0-1], g...	284.0	[0..10]	[367..20]
gi\|14026581, gi\|... - gi\|14026581\|dbj\|BAB53178.1\| ABC transporter, periplasmic binding-protein [Mesorhizobium loti MAFF303...	284.0	[0..1]	[366..1]
gi\|25358050, gi\|... - pir\|\|AD2651 hypothetical protein potF [imported] - Agrobacterium tumefaciens (strain C58, Dupont), ... gi\|17738965, gi\|... - gi\|17934520\|ref\|NP_531310.1\| ABC transporter, substrate binding protein [putrescine] [Agrobacterium ...	284.0	[0..1]	[366..1]
gi\|26107277, gi\|... - gi\|26246877\|ref\|NP_752917.1\| putrescine ABC transporter periplasmic substrate-binding protein [Esche... gi\|227884182, gi... - gi\|227884182\|ref\|ZP_04001987.1\| putrescine ABC superfamily ATP binding cassette transporter periplas...	283.0	[0..2]	[367..54]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFNKMTTL ALVTAGTLAS VAVQAEEVVR MYNWSDYIAE DTLENFKKET GIRVIYDVFD  60
   61 SNEVVEAKLL SGRSGYDIVV PSNHFLAKQI KAGAFKPLDR SKLTNFKNLN ADLMKLLEKA 120
  121 DPGNQYAVPY LWGTNGIGYN INKVKAAVGE DAPPFNSMEL IFNPKYAEKI SKCGFAMLDS 180
  181 ADDMVPQAMI YLGLDPNSTK AEDYEKAGEL LEKIRPYVTY FHSSRYISDL ANGDICVAYG 240
  241 FSGDVFQAAA RADEAGNGNK IGYSIPKEGA NLWFDMLAIP ADATNVENAH KLINYLLRPE 300
  301 VIAPISNYVA YANPNDLAQP LVDEAIRNDP AIYPPKEVLD KLYIGEIRPL KIQRVLTRVW 360
  361 TKVKSGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.30103
Match:	1a99A
Description:	Putrescine receptor (PotF)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits