YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372825, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	404 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372825, gi|....

Description	E-value	Query Range	Subject Range
gi\|113205155 - gi\|113205155\|gb\|ABI34274.1\| IS10 transposase, putative [Lycopersicon esculentum]	463.0	[0..1]	[398..247]
gi\|114803673 - gi\|114803673\|gb\|ABI81212.1\| transposase [Vibrio sp. RV-16]	456.0	[0..1]	[398..1]
gi\|24111918, gi\|... - gi\|24111918\|ref\|NP_706428.1\| iso-IS10R ORF [Shigella flexneri 2a str. 301], gi\|24050722\|gb\|AAN42135....	455.0	[0..1]	[398..1]
gi\|253324122, gi... - gi\|253773078\|ref\|YP_003035909.1\| transposase IS4 family protein [Escherichia coli BL21(DE3)], gi\|253... gi\|134044525, gi... - gi\|134044525\|ref\|YP_001101847.1\| transposase InsE1 for insertion sequence IS10R [Yersinia ruckeri], ... gi\|50949624 - gi\|50949624\|emb\|CAH10547.1\| hypothetical protein [Homo sapiens] gi\|190702508, gi... - gi\|190702508\|gb\|ACE75393.1\| transposase (Tn10) [Glyptapanteles indiensis], gi\|190702410\|gb\|ACE75300.... gi\|165928598, gi... - gi\|215528087\|ref\|YP_002332872.1\| Tn10 transposase [Klebsiella pneumoniae], gi\|215528079\|ref\|YP_00233... gi\|165869883, gi... - gi\|165869883\|ref\|ZP_02214540.1\| IS10R, transposase [Bacillus anthracis str. A0488], gi\|164714206\|gb\|... gi\|208008350, gi... - gi\|209694399\|ref\|YP_002262327.1\| transposase [Aliivibrio salmonicida LFI1238], gi\|208008350\|emb\|CAQ7... gi\|110738921, gi... - gi\|110743946\|dbj\|BAE99806.1\| hypothetical protein [Arabidopsis thaliana], gi\|110738921\|dbj\|BAF01382.... gi\|190151088, gi... - gi\|190151088\|ref\|YP_001969613.1\| iso-IS10R ORF [Actinobacillus pleuropneumoniae serovar 7 str. AP76]... gi\|170682497, gi... - gi\|170682497\|ref\|YP_001746694.1\| IS10 transposase [Escherichia coli SMS-3-5], gi\|170681161\|ref\|YP_00... gi\|167529329, gi... - gi\|167635286\|ref\|ZP_02393601.1\| IS10R, transposase [Bacillus anthracis str. A0442], gi\|167529329\|gb\|... tr\|X2H2Z5\|X2H2Z5... - Mobile element protein OS=Gilliamella apicola GN=A9G32_02135 PE=4 SV=1 gi\|1196998 - gi\|1196998\|gb\|AAA88660.1\| unknown protein [Transposon Tn10] gi\|209947544, gi... - gi\|51507286\|emb\|CAF29036.1\| putative transposase [Haemophilus influenzae], gi\|209947544\|ref\|YP_00229... gi\|29468502 - gi\|29468502\|gb\|AAO85556.1\| transposase [Nicotiana attenuata] gi\|60393181, gi\|... - gi\|60393181\|gb\|AAX19504.1\| putative transposase [Salmonella typhimurium], gi\|32470141\|ref\|NP_863365.... gi\|5103202, gi\|9... - gi\|9507603\|ref\|NP_052934.1\| transposase [Plasmid R100], gi\|5103202\|dbj\|BAA78838.1\| transposase of Tn... gi\|158452577, gi... - gi\|89033322\|gb\|ABD60000.1\| transposase [Escherichia coli], gi\|42494910\|gb\|AAS17733.1\| transposase pr... gi\|223460697, gi... - gi\|223460697\|gb\|AAI38407.1\| Olfr780 protein [Mus musculus], gi\|223459910\|gb\|AAI38406.1\| Olfr780 prot... gi\|226407491, gi... - gi\|38348039\|ref\|NP_941288.1\| Tn10 transposase for IS10 right [Serratia marcescens], gi\|38259516\|emb\|... gi\|5738092 - gi\|5738092\|gb\|AAD50250.1\|AF162223_9 IS10-right transposase [Shigella flexneri] gi\|47777445, gi\|... - gi\|50933065\|ref\|XP_476060.1\| putative Tn10 transposase [Oryza sativa (japonica cultivar-group)], gb\|... gi\|87240304 - gi\|87240304\|gb\|ABD32162.1\| Transposase, IS4; Polynucleotidyl transferase, Ribonuclease H fold [Medic... gi\|72390689, gi\|... - gi\|72390689\|ref\|XP_845639.1\| transposase of Tn10 [Trypanosoma brucei TREU927], gi\|71849696\|ref\|XP_82... gi\|62208247 - gi\|62208247\|gb\|AAX77003.1\| transposase DDE-like protein [Sus scrofa] gi\|62128427, gi\|... - gi\|62182638\|ref\|YP_219055.1\| transposase of Tn10 [Salmonella enterica subsp. enterica serovar Choler... gi\|62175753, gi\|... - gi\|72386551\|ref\|XP_843700.1\| transposase of Tn10 [Trypanosoma brucei], gi\|71750380\|ref\|XP_824101.1\| ... gi\|76562971, gi\|... - gi\|76787914\|ref\|YP_330640.1\| IS10R, transposase [Streptococcus agalactiae A909], gi\|76562971\|gb\|ABA4... gi\|150388146, gi... - gi\|150388146\|ref\|YP_001318195.1\| transposase, IS4 family protein [Alkaliphilus metalliredigens QYMF]... gi\|5706382 - gi\|5706382\|dbj\|BAA83097.1\| transposase [Methylomonas aminofaciens] gi\|9957026 - gi\|9957026\|gb\|AAG09179.1\| PSMCH1 [Bluetongue virus] gi\|45384784 - gi\|45384784\|gb\|AAS59434.1\| IS10 transposase-like protein [Chinchilla lanigera] gi\|16648094 - gi\|16648094\|gb\|AAL25312.1\| GH10639p [Drosophila melanogaster] tr\|A0A0G2KB79\|A0... - Tax_Id=10116 46 kDa protein, Uncharacterized protein OS=Rattus norvegicus, Uncharacterized protein O... gi\|60393181\|gb\|A... - tnpR [Salmonella typhimurium], hypothetical protein R64_p010 [Salmonella typhimurium], putative tran... gi\|48527545 - gi\|48527545\|gb\|AAT45902.1\| transposase [Bacillus subtilis] gi\|53133334, gi\|... - gi\|53136208\|emb\|CAG32494.1\| hypothetical protein [Gallus gallus], gi\|53133334\|emb\|CAG31996.1\| hypoth... gi\|151940655 - gi\|151940655\|gb\|EDN59069.1\| hypothetical protein SCY_4910 [Saccharomyces cerevisiae YJM789] gi\|27525451 - gi\|27525451\|emb\|CAD56977.1\| transposase [Citrobacter freundii] gi\|145849054 - gi\|145849054\|emb\|CAM91615.1\| putative is10 transposase (right) [Salmonella enterica]	455.0	[0..1]	[398..1]
gi\|47600635 - gi\|47600635\|emb\|CAE55755.1\| YedA protein [Escherichia coli Nissle 1917] gi\|7800327\|gb\|AA... - IS10 transposase [Salmonella typhi], IS10 transposase [Salmonella typhi], IS10 transposase [Salmonel... gi\|253773081, gi... - gi\|253775506\|ref\|YP_003038337.1\| transposase IS4 family protein [Escherichia coli BL21(DE3)], gi\|253... gi\|110812361 - gi\|110812361\|gb\|ABG91717.1\| insertion sequence IS10 transposase [Shewanella putrefaciens 200] gi\|16183600 - gb\|AAL13711.1\| GM13045p [Drosophila melanogaster] gi\|47600635, gi\|... - gi\|57434477\|emb\|CAI43894.1\| transposase for IS10 [Escherichia coli], gi\|47600635\|emb\|CAE55755.1\| Yed... gi\|124360364, gi... - gi\|87162887\|gb\|ABD28682.1\| Transposase, IS4; Polynucleotidyl transferase, Ribonuclease H fold [Medic... gi\|197248457, gi... - gi\|197250950\|ref\|YP_002145464.1\| IS10 transposase [Salmonella enterica subsp. enterica serovar Agona... gi\|10957274, gi\|... - gi\|7800327\|gb\|AAF69923.1\|AF250878_84 IS10 transposase [Salmonella typhi], gi\|7739622\|gb\|AAF68939.1\|A... gi\|86281074, gi\|... - gi\|86356972\|ref\|YP_468864.1\| insertion sequence transposase protein, IS10 [Rhizobium etli CFN 42], g... gi\|254363002, gi... - gi\|254363002\|ref\|ZP_04979064.1\| Tn10 family transposase [Mannheimia haemolytica PHL213], gi\|19774776... gi\|28875473 - gi\|28875473\|gb\|AAO59957.1\| YedA [uncultured bacterium] gi\|145308180 - gi\|145308180\|gb\|ABP57366.1\| hypothetical protein bst111 [Bacteroides uniformis] cex.cds.5943233.... - null, null gi\|134078294 - gi\|134078294\|emb\|CAK96875.1\| unnamed protein product [Aspergillus niger] gi\|153946962, gi... - gi\|153946962\|ref\|YP_001401506.1\| IS10, transposase [Yersinia pseudotuberculosis IP 31758], gi\|152958... gi\|145242206 - gi\|145242206\|ref\|XP_001393749.1\| hypothetical protein An09g04350 [Aspergillus niger] gi\|197244374 - gi\|197244374\|emb\|CAQ64676.1\| IS10 transposase [Streptomyces lasaliensis] gi\|172051562, gi... - gi\|172051603\|emb\|CAQ34998.1\| IS10 [Photobacterium damselae subsp. piscicida], gi\|172051562\|emb\|CAQ34...	455.0	[0..1]	[398..1]
gi\|46560045 - gi\|46560045\|gb\|AAT00497.1\| transposase [Escherichia coli]	454.0	[0..1]	[398..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVLTILHQS LYQHCPEIHQ KRLNTLMVAC KALINADCLT LTHLGRHIDG TSTHTKHSIK  60
   61 RMDRLLGNPH LHHERLAVYQ WHAKWLLTAH TMPTILVDWS DMREGRELIA LRASIAIKGR 120
  121 SITLYERTFP LVLQGTQTAH NQFLNELHKV LP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.529	0.854	transposase activity	c.52.1	Restriction endonuclease-like
View	Download	0.482	0.027	transposase activity	a.1.1	Globin-like
View	Download	0.558	0.007	transposase activity	d.17.4	NTF2-like
View	Download	0.583	0.006	transposase activity	d.110.3	PYP-like sensor domain (PAS domain)
View	Download	0.526	0.000	transposase activity	d.58.22	TRADD, N-terminal domain

Predicted Domain #2

Region A:
Residues: [153-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNITPLIVTD AGFRNPWFRK VEQLGWYWLG RVRGLSVYRL HPFGRQFSLK ALYPKASRRA  60
   61 KHVGRVALSV KKPLLCEMVL FRAPSKGRKG QRSTTTDCHH TAQWTYELTA KEPWALVTNL 120
  121 TIEAMSPQKL VNIYQKRMQI EETFRDLKSP AYGFGLHHSR TRYAARMDIL LLIALLVQLA 180
  181 FWWVGLYGET QQLQRHFQAN TVKKRNVLST IRMGKELLRR RHDYPISADD LLCAAKKLAQ 240
  241 LSLTHGCWGY EL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.045757
Match:	1mm8A
Description:	Transposase inhibitor (Tn5 transposase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits