YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372818, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372818, gi|....

Description	E-value	Query Range	Subject Range
gi\|86555055, gi\|... - gi\|86606513\|ref\|YP_475276.1\| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab], gi\|865550... gi\|86606513 - gi\|86606513\|ref\|YP_475276.1\| polyA polymerase family protein [Cyanobacteria bacterium Yellowstone A-...	129.0	[0..2]	[134..318]
gi\|77997052, gi\|... - gi\|78044937\|ref\|YP_360768.1\| polyA polymerase family protein [Carboxydothermus hydrogenoformans Z-29...	128.0	[0..4]	[137..308]
gi\|86610318 - gi\|86610318\|ref\|YP_479080.1\| polyA polymerase family protein [Cyanobacteria bacterium Yellowstone B-... gi\|86558860, gi\|... - gi\|86610318\|ref\|YP_479080.1\| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)], gi...	127.0	[0..2]	[134..320]
gi\|15643897, gi\|... - gi\|4981687\|gb\|AAD36216.1\|AE001771_9 conserved hypothetical protein [Thermotoga maritima MSB8], gi\|15... gi\|7462343 - pir\|\|H72290 conserved hypothetical protein - Thermotoga maritima (strain MSB8)	126.0	[0..3]	[134..1]
gi\|78495510, gi\|... - gi\|90422132\|ref\|YP_530502.1\| signal-transduction protein [Rhodopseudomonas palustris BisB18], gi\|901...	125.0	[0..1]	[142..18]
gi\|186680817, gi... - gi\|23130622\|ref\|ZP_00112435.1\| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Nostoc punct...	124.0	[0..2]	[140..313]
gi\|22294240, gi\|... - gi\|22298062\|ref\|NP_681309.1\| polyA polymerase [Thermosynechococcus elongatus BP-1], gi\|22294240\|dbj\|...	122.0	[0..4]	[143..310]
gi\|20904852, gi\|... - gi\|21226577\|ref\|NP_632499.1\| putative inosine-5'-monophosphate dehydrogenase [Methanosarcina mazei G...	121.0	[0..2]	[134..15]
gi\|46198785, gi\|... - gi\|46198785\|ref\|YP_004452.1\| acetoin utilization acuB protein [Thermus thermophilus HB27], gi\|461964...	121.0	[0..3]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIIIADIMC TRVVTVEMDD RLTVAKDIFE QANFHHLLVL DEYKLEGVLS ERDLLRAISP  60
   61 NLGNGAETSK DLETLQKRIH QVMTRNPVTV APYVSLDVAS RTLLEHNIGC LPVLENGDLV 120
  121 GIVTWKDLLR AYCAHNEVNQ SEC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2cu0A
Description:	No description for 2cu0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits