YRC Public Data Repository - Protein Structure Prediction

Protein:	TORD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TORD_SHEON.

Description	E-value	Query Range	Subject Range
TORD_SHESR - Chaperone protein TorD OS=Shewanella sp. (strain MR-7) GN=torD PE=3 SV=1	179.0	[0..1]	[209..1]
TORD_SHESM - Chaperone protein TorD OS=Shewanella sp. (strain MR-4) GN=torD PE=3 SV=1	178.0	[0..1]	[208..1]
TORD_SHESA - Chaperone protein TorD OS=Shewanella sp. (strain ANA-3) GN=torD PE=3 SV=1	178.0	[0..1]	[208..1]
gi\|68520241, gi\|... - gi\|68542019\|ref\|ZP_00581756.1\| Cytoplasmic chaperone TorD [Shewanella baltica OS155], gi\|68520241\|gb...	175.0	[0..1]	[208..40]
TORD_SHEB9 - Chaperone protein TorD OS=Shewanella baltica (strain OS195) GN=torD PE=3 SV=1	171.0	[0..1]	[207..1]
TORD_SHEMA - Chaperone protein TorD OS=Shewanella massilia GN=torD PE=1 SV=3	169.0	[0..1]	[208..1]
gi\|86146466, gi\|... - gi\|86146466\|ref\|ZP_01064789.1\| chaperone protein TorD [Vibrio sp. MED222], gi\|85835729\|gb\|EAQ53864.1...	152.0	[0..2]	[204..3]
DMSD_HAEIN - Probable Tat proofreading chaperone DmsD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / ... Y1044_HAEIN, YNF... - (P44102) Hypothetical protein HI1044, Uncharacterized protein HI_1044 OS=Haemophilus influenzae GN=H...	152.0	[0..4]	[212..2]
gi\|42630139 - gi\|42630139\|ref\|ZP_00155683.1\| COG3381: Uncharacterized component of anaerobic dehydrogenases [Haemo...	151.0	[0..4]	[212..2]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVDINHAR ALVYQLLSSL FAREVNAQRL QELTSDAAQQ FWTQLGHEPE FSAPVATMQK  60
   61 VLNDLQRNDA LLELAADYCG LFLVGTRHSA SPYASLYLNS EDEPLLFGQQ HQQMSEFLHQ 120
  121 SKLQVQSHFP EPADHLAVML AYMGHLACHS EDAAQLNFLD ACIDSWLAKF VVKVVECDSK 180
  181 HRNGFYSALA SLTLAWVKQD KQLLEQTINS SVEQTLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	1n1cA
Description:	TorA specific chaperone TorD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	0.272931224731761	bayes_pls_golite062009
binding	0.240698431310767	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: