YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372804, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372804, gi|....

Description	E-value	Query Range	Subject Range
gi\|76151977 - gi\|76151977\|gb\|ABA39707.1\| TcrA [Enterococcus faecium]	236.0	[0..1]	[293..467]
gi\|150019611, gi... - gi\|82746791\|ref\|ZP_00909294.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP...	236.0	[0..1]	[294..469]
gi\|126699732, gi... - gi\|126699732\|ref\|YP_001088629.1\| putative copper-transporting P-type ATPase [Clostridium difficile 6...	233.0	[0..1]	[294..488]
gi\|145954137, gi... - gi\|90574234\|ref\|ZP_01230737.1\| hypothetical protein CdifQ_02002279 [Clostridium difficile QCD-32g58]... gi\|255314834 - gi\|255314834\|ref\|ZP_05356417.1\| putative copper-transporting P-type ATPase [Clostridium difficile QC... gi\|255517508 - gi\|255517508\|ref\|ZP_05385184.1\| putative copper-transporting P-type ATPase [Clostridium difficile QC... gi\|255650619 - gi\|255650619\|ref\|ZP_05397521.1\| putative copper-transporting P-type ATPase [Clostridium difficile QC... gi\|254975705 - gi\|254975705\|ref\|ZP_05272177.1\| putative copper-transporting P-type ATPase [Clostridium difficile QC...	232.0	[0..1]	[294..488]
gi\|89897256, gi\|... - gi\|89897256\|ref\|YP_520743.1\| hypothetical protein DSY4510 [Desulfitobacterium hafniense Y51], gi\|893...	231.0	[0..1]	[293..476]
gi\|145408869, gi... - gi\|82499630\|ref\|ZP_00885070.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP...	230.0	[0..1]	[293..477]
gi\|18144214, gi\|... - gi\|18309537\|ref\|NP_561471.1\| copper-translocating P-type ATPase [Clostridium perfringens str. 13], g...	229.0	[0..1]	[294..546]
gi\|29374937, gi\|... - gi\|29374937\|ref\|NP_814090.1\| copper-translocating P-type ATPase [Enterococcus faecalis V583], gi\|293...	229.0	[0..1]	[294..475]
gi\|75827509 - gi\|75827509\|ref\|ZP_00756944.1\| COG2217: Cation transport ATPase [Vibrio cholerae O395]	228.0	[0..1]	[294..559]
gi\|94548422, gi\|... - gi\|94994914\|ref\|YP_603012.1\| Copper-exporting ATPase [Streptococcus pyogenes MGAS10750], gi\|94548422...	228.0	[0..1]	[293..403]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSLSQFAM RLIYEDISLE DALATWIVSL AKSLKLTSLS IAPIRRQVAL HCVELALPVE  60
   61 PTAELLATFP LQAEL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.855	0.019	phosphoserine phosphatase activity	a.46.1	Methionine synthase domain

Predicted Domain #2

Region A:
Residues: [76-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLIRGPLPQL SKPGLLVMDM DSTAIQIECI DELAAMAGVG EQVAAITERA MQGELDFEQS  60
   61 LRQRVAQLKG ADAKIIHTLC ESLPFMPGLE AMLAELKSHH WRLVVASGGF TPFVGHLKQL 120
  121 LNLDAAFANE LVITDGKLAG TVTGKIVDAQ FKADVVSRCS QEWQIPAGQR VAIGDGANDI 180
  181 PMVQAADFGI AFHAKPKLAA AADARIRGLD LRVLPYLLQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1f5sA
Description:	Phosphoserine phosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoserine phosphatase activity	2.75785471819455	bayes_pls_golite062009
catalytic activity	1.92340854382984	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: