YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372795, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372795, gi|....

Description	E-value	Query Range	Subject Range
gi\|50752715 - gi\|50752715\|ref\|XP_413724.1\| PREDICTED: similar to Na+-dependent purine-selective nucleoside transpo...	541.0	[0..2]	[429..785]
S28A2_MOUSE - Sodium/nucleoside cotransporter 2 OS=Mus musculus GN=Slc28a2 PE=1 SV=2	515.0	[0..2]	[429..174]
gi\|15721849 - gi\|15721849\|gb\|AAK38150.1\| concentrative Na+ nucleoside cotransporter [Rattus norvegicus]	513.0	[0..2]	[429..173]
S28A1_RABIT - Sodium/nucleoside cotransporter 1 OS=Oryctolagus cuniculus GN=SLC28A1 PE=2 SV=1	512.0	[0..2]	[429..172]
gi\|76627899 - gi\|76627899\|ref\|XP_610426.2\| PREDICTED: similar to solute carrier family 28 (sodium-coupled nucleosi...	510.0	[0..2]	[429..144]
gi\|50418042, gi\|... - gi\|50418042\|gb\|AAH77436.1\| Slc28a2-prov protein [Xenopus laevis], gi\|148225855\|ref\|NP_001086782.1\| s...	510.0	[0..2]	[429..156]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILMSLVGV VVLLAIGFLL SNNKKAINLR TVGGALAIQA AFGGFVLYVP VGKDILKGMS  60
   61 DAVSSVIGFA QNGIGFLFGD LANFKL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.79588
Match:	PF01773.11
Description:	No description for PF01773.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [87-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFIFAVNVLP VIVFFSSLIA VLYYLGVMQW IIRIIGGGLQ KALGTSRTES MSATANIFVG  60
   61 QTEAPLVVRP FIPTMTQSEL FAVMVGGLAS IAGSVLAGYA QMGVPIEFLV AASFMAAPGG 120
  121 LLMAKLMHPE TEVAKNDMDE LPEDPDKPAN VLDAAAAGAS SGMHLALNVG AML

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.481486
Match:	PF07670.5
Description:	No description for PF07670.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [260-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAFVGLIAMI NGIIGGVGGW FGVEGLTLEL ILGYVFMPLA FLIGVPWNEA LVAGSFIGQK  60
   61 IIVNEFVAYL NFAPYISEAA TACTSVAAEV VKGSLPLCVA ETQAVMTSRT QAIVSFALCG 120
  121 FANLSSIAIL LGGLGAMAPN RRHDLAKMGI RAVIAGSLAN LMSATIAGLF LAI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits